Avir015273.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000753:271000-273206[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.33 26 5.0 0.0 26 47 249 270 240 275 0.84 2 8 0.14 11 6.2 0.0 22 47 273 298 268 303 0.85 3 8 0.0092 0.73 10.0 0.1 21 49 300 328 295 331 0.87 4 8 0.021 1.7 8.9 0.1 21 44 328 351 326 356 0.86 5 8 0.62 49 4.1 0.0 21 45 356 380 352 386 0.89 6 8 0.47 37 4.5 0.3 26 46 389 409 382 415 0.85 7 8 0.03 2.3 8.4 0.0 21 47 440 466 431 471 0.85 8 8 0.093 7.4 6.8 0.2 21 45 468 492 463 496 0.90
Sequence Information
- Coding Sequence
- ATGGATGTTTCCAAAGAAAAAATTAAAACTGAAGAAATGAAGATTGATCACCATTTTTCACTCGATTTTAGGAACTGTTATTACACTGACGTGAATCTTGATTTAAATATTAACAAAGAACGTTTACACTCGGTTTGTGAAATGTCCAATCTGAAAAAAGAGGCCGATGATGATTTACTTTTAGAGGGAACGTCATTCAATTCTAAAGCTCAAGCAAATCACAGAATTAAAAAAATTAAAACCGAAGCAATCGAGATTGTTGACCAACTTTCACTCGAAATGGCAAACTGTTATAAAGCTGAGATAAATCTAGATTTTACTGTTAAAAATGAACTTGTTTACCCAGTTTGTGAGATGCCCGATCTCAAAATTGAGGCCGATAAAGATTTACTTTTAGTGGGAACTTCATTCAATTCTGAAGGGTTTCTGTCAGCTCCAAAGGGATCAAAATATCATTGTGGGAAATATGGGACCTGTTACTTTTGCGGACAATTTTTCTTTCATAAACTACTGTTAGTACATCATTTCTATGTGTACCACTTTTTTCAAAGTACTTCAAAAACTATTATTAAGAAGAACAATTCTACTAAGAAACGCAACAAAAAATGCTTAAACATAAATCGTATTTATTACAAGAATTGCTCAAAAATGTTTGTGCAAAATCGTTTAACAGTTATCAAAAATAGAAAAACAGCTTTTCTTGCTCATAAAAATCTAAAACAATGCATTGGTGACAAATCTTTTAAATGTAATATTTGTTCAAAACCTTTGAAAAGCAAACGTAATTTAAACGATCATCTAAAAACACACACTGGTGATAAACCGTTTAAATGTAGTATTTGTTCGAAATCTTTCTCACAAAAATCCAATTTAAAACAACATCAAAGAATTCATACTGGTGAAAAACCGTTTAAATGTAATATTTGTTCAAAATTTTTCAGAGAAAAATGTACTTTACAACGACATCTAACAATTCACACTGGTGAAAAACCGTTCACATGTAATATTTGTTTAAAAGTTTTTACACGCAAATCTCATTTAGTAAGACATGCAAGAATTCACACCGGTGAAAAACCATTTAAATGTAATATTTGTTCAAAACTTTTCACAAGCAAACGTGGTTTAAACGACCATCTAATTATTCATACTGGTGAAAAACTGTTTAAATGTAATATTTGTTTAAAACATTTCAAAACACAAAGTTACTTAAGACGTCATCTAAGATTTCACACTGGTGAAAAATCCTTTAAGTGTAATATTTGTTCAAAACAATTCACAGTTTCATGTAGTTTAAAAAAACACGAAAGAATCCACACTGGTGAAAAACCGTTTAAATGTAATATTTGTTCGAAATTTTTCTCACAAAAATCTAATTTAAAACAACATCAAAGAATTCATACTGGTGAAAAACCGTTTAAATGTAATTTTTGTTCAAATGTTTTCAGAGAAAAATGTACTTTACAACGACATCAAAAAATTCACAGTGAAAAACTTTTTAAATCTGAATATTATTTAAACGAAGGTTCCACGGGAAATCATGGTTAA
- Protein Sequence
- MDVSKEKIKTEEMKIDHHFSLDFRNCYYTDVNLDLNINKERLHSVCEMSNLKKEADDDLLLEGTSFNSKAQANHRIKKIKTEAIEIVDQLSLEMANCYKAEINLDFTVKNELVYPVCEMPDLKIEADKDLLLVGTSFNSEGFLSAPKGSKYHCGKYGTCYFCGQFFFHKLLLVHHFYVYHFFQSTSKTIIKKNNSTKKRNKKCLNINRIYYKNCSKMFVQNRLTVIKNRKTAFLAHKNLKQCIGDKSFKCNICSKPLKSKRNLNDHLKTHTGDKPFKCSICSKSFSQKSNLKQHQRIHTGEKPFKCNICSKFFREKCTLQRHLTIHTGEKPFTCNICLKVFTRKSHLVRHARIHTGEKPFKCNICSKLFTSKRGLNDHLIIHTGEKLFKCNICLKHFKTQSYLRRHLRFHTGEKSFKCNICSKQFTVSCSLKKHERIHTGEKPFKCNICSKFFSQKSNLKQHQRIHTGEKPFKCNFCSNVFREKCTLQRHQKIHSEKLFKSEYYLNEGSTGNHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057011;
- 90% Identity
- iTF_00057011;
- 80% Identity
- iTF_00057011;