Avir003864.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000016:1953181-1963751[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.021 1.7 8.8 0.2 22 44 232 254 218 258 0.88 2 12 0.31 24 5.1 0.1 22 45 260 283 254 287 0.87 3 12 0.0063 0.5 10.5 0.1 21 45 287 311 282 314 0.91 4 12 0.12 9.5 6.4 0.1 22 44 316 338 313 342 0.87 5 12 0.51 40 4.4 0.1 21 45 343 367 338 374 0.85 6 12 0.53 42 4.4 0.1 21 45 371 395 367 402 0.86 7 12 0.36 28 4.9 0.1 21 44 399 422 394 425 0.90 8 12 0.32 26 5.0 0.1 21 47 427 453 422 459 0.84 9 12 0.76 60 3.9 0.1 23 44 457 478 451 482 0.88 10 12 0.1 7.9 6.7 0.1 21 45 483 507 478 514 0.86 11 12 0.53 42 4.4 0.1 21 45 511 535 507 542 0.82 12 12 0.095 7.5 6.7 0.2 21 44 539 562 531 567 0.88
Sequence Information
- Coding Sequence
- ATGGATATTTCTGTAATCAAACAAGAAAAAACAGAAATTGTTGGCGAATCAAAACCCGAATTGCATTATTTCGATCAAATGGAAATAATTCAAGAACTGCCCTACGAAAGTAGTATGTTTAAGAGGGAACCGAAATTCGAAGACGAAAACTCGCAACAATTCGTAACAATGGATAATTCTTCAAGAAATTCTTTAACTACTAAGAGTGAAATGTTCATTATCAGTGAAAATGATATTTCAAGTCAAACTAATCTTCAATTTGACATTAAAAAAGAAGAATTACACTCTATCTTTGATTTACCGGATTTTAAAAAGGAATTTCAAGATTTTGACGAAGAATTACATTTAGAGCGAAGCATCAAAAGATATTCCAGGAAACAGAATACTAGTTGTAAAAAGCGTTTCCTAGCTGCGGCAAGAAAATGGCAACTTCACTTTGGAAAATTCTATGGAACATGTCCCTCTTGTGGAAAATTTTTCTATGATATGTTGCTATTTTTAAATCATTTTTATATTTACCATTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGAAATAATTCTGCCACAAAGCATATTAAACGTCAAGATTTTAGTAATTTAAACCAACAGATAAGAATTCATGGTGGACAAAAACGTTTCACACCAAAAAGTGATTTAAAAAAACATACTAAAACCCACACTGTTAAAAACCCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCAATAGTTTAAAAAGACATATTAGAACTCACACTGACGAGAAAACTTTTAAATGTAAAATATGTTCGAAATGTTTCAAAGAATCCTATAATTTAAAATCTCATATTAAAACTCATACTGGCGAGAAACCTTTTAAATGTAAGATTTGTTCAAACTGTTTCACACAATCAAGTTACTTAAAAAGACATATTAAAACTCACACTGACGAGAAAACTTTTAAATGTAAAATATGTTCGAAATGTTTCCGAAATTCCTTTAACTTAAAAACTCATATCAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTTAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTTAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAATCGTTCCAAATACTTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCTAAATGTTTCAAACATTCTATTAGTTTAAAAGCTCATATTAGCACTCACACTGACGTGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCACACAATCCAGTTCCTTAAATACTCATATTAGAACTCACACTGATGAGAAACCTTTTGAATGTGAAATTTGTTTAAAATGTTTCACACAATCCAGTTCCTTAAATACTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATTCGTTCCAGTGACTTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTGAATGTGAAATATGTTCTAAATGTTTCAAACATGCTAATAGTTTAAAAAGACATATTAGCACCCACACTAACAGGGGCGGATCGTGA
- Protein Sequence
- MDISVIKQEKTEIVGESKPELHYFDQMEIIQELPYESSMFKREPKFEDENSQQFVTMDNSSRNSLTTKSEMFIISENDISSQTNLQFDIKKEELHSIFDLPDFKKEFQDFDEELHLERSIKRYSRKQNTSCKKRFLAAARKWQLHFGKFYGTCPSCGKFFYDMLLFLNHFYIYHFFVNSKKSVNLRRNNSATKHIKRQDFSNLNQQIRIHGGQKRFTPKSDLKKHTKTHTVKNPFKCKICSKCFTQSNSLKRHIRTHTDEKTFKCKICSKCFKESYNLKSHIKTHTGEKPFKCKICSNCFTQSSYLKRHIKTHTDEKTFKCKICSKCFRNSFNLKTHIRTHTDEKPFKCKICSKCFNHSSTLKTHIRTHTGEKPFKCKICSKCFNHSSTLKTHIRTHTGEKPFKCKICSKCFNRSKYLKSHIRTHTDEKPFKCEICSKCFKHSISLKAHISTHTDVKPFKCKICLKCFTQSSSLNTHIRTHTDEKPFECEICLKCFTQSSSLNTHIRTHTGEKPFKCKICSKCFIRSSDLKSHIRTHTDEKPFECEICSKCFKHANSLKRHISTHTNRGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056854;
- 90% Identity
- iTF_00056854;
- 80% Identity
- iTF_00056854;