Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001120:46772-67350[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.71 56 3.9 0.3 20 45 206 231 199 238 0.78

2 14 0.056 4.4 7.5 0.1 22 44 236 258 231 262 0.89

3 14 0.67 53 4.0 0.1 21 49 263 291 259 296 0.87

4 14 1.6 1.3e+02 2.8 0.1 21 48 292 319 288 323 0.85

5 14 0.0042 0.33 11.1 0.1 21 45 320 344 318 351 0.87

6 14 0.022 1.7 8.8 0.1 22 44 349 371 345 374 0.90

7 14 0.0031 0.24 11.5 0.1 21 46 376 401 372 408 0.85

8 14 6.3 5e+02 0.9 0.1 21 46 404 429 400 437 0.82

9 14 1.3 1e+02 3.1 0.0 26 52 438 464 433 466 0.86

10 14 0.99 78 3.5 0.0 21 49 461 489 459 493 0.83

11 14 0.22 18 5.6 0.0 21 52 489 520 485 521 0.87

12 14 0.81 64 3.8 0.1 21 48 517 544 514 548 0.86

13 14 0.12 9.4 6.4 0.3 21 45 545 569 541 575 0.91

14 14 2.9 2.3e+02 2.0 0.1 22 52 574 604 570 606 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.71	56	3.9	0.3	20	45	206	231	199	238	0.78
2	14	0.056	4.4	7.5	0.1	22	44	236	258	231	262	0.89
3	14	0.67	53	4.0	0.1	21	49	263	291	259	296	0.87
4	14	1.6	1.3e+02	2.8	0.1	21	48	292	319	288	323	0.85
5	14	0.0042	0.33	11.1	0.1	21	45	320	344	318	351	0.87
6	14	0.022	1.7	8.8	0.1	22	44	349	371	345	374	0.90
7	14	0.0031	0.24	11.5	0.1	21	46	376	401	372	408	0.85
8	14	6.3	5e+02	0.9	0.1	21	46	404	429	400	437	0.82
9	14	1.3	1e+02	3.1	0.0	26	52	438	464	433	466	0.86
10	14	0.99	78	3.5	0.0	21	49	461	489	459	493	0.83
11	14	0.22	18	5.6	0.0	21	52	489	520	485	521	0.87
12	14	0.81	64	3.8	0.1	21	48	517	544	514	548	0.86
13	14	0.12	9.4	6.4	0.3	21	45	545	569	541	575	0.91
14	14	2.9	2.3e+02	2.0	0.1	22	52	574	604	570	606	0.83

Sequence Information

Coding Sequence: ATGGAAGATGTCGATTATACGTTAATGAATAATAAAATTGAAAATTGTTCTAACGATTTGTTATCCAATATTAAAACCGAAGAACCTGATATTTTCGAAGAATCTAAACTCGAATTTGAGAACTTGCATCAATTCGATCTCTGTAAGATCAAAACGGAAAGTTATGGAGAAAAAGTTTCCCCTACTAAAAGTGATGTGTTAATGAACAGAGAAAATATAAAACCGGAAAATATTGATTCAAATGAGGGTATGCAAGAAAGAAAAAGTGATACCGAAATTAAGACAGAAATTACACTGGGTCTATTTGATTTCCCTGTTTTTAGAAATGATTTGGGTGAAAATCGACAAACAGTGCAAACAATCAATACGTATTGTAGGAAAAAACGTTCCCTATCTGCGACAAAAAAAAGTCAAACTTACTTCGGAAAACTCTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAAGCGCTATTTTTAAATCATTTTTATATTTACCACTTATTAGTTAATTCTAAAAAACCTGTTACCTTGAGAAGGAGTAATTCTGCTACAAAACACGTTAAACTAGAAGGTCTAGATAATTTAAACAAACAGATGCGATCTCACTTTAGTGAAAATTCTTTAAGTTGTGAAATTTGTTTAAGACATTTTACAAAACAAAGTAGTTTAAAAAGACATATTAGAACCCACACTGGCGACAAACCGTTTAAATGTAAAATTTGTTCAAAATGTTTCAGACAATCCGATTATTTAAAAAGTCATTTTAGGACTCACACTGGTGAGAAACCTTTCAGATGTAAAATTTGTTCAAAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATATTATTAGAACTCACATCAGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTACCCACGAGAAAAGGATTTGAAAAAACATATTAAAGTTCATACTGGCGAGAAGCCGTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAATCATTTAAGAAAGCATATTAAAAATCACACTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATACAATCTGGTAATTTAACAAGGCATATTAGAACTCACACTGGTGAAACACCTTTCCGATGTGAGATTTGTTCAAAATCTTTTATACAATCCGGTAATTTAAAGAGGCATATTAGAACGCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACTGAAAATGGTAGCTTAAAAGAGCATATTATTAGAACTCACATCGGTATAAAGTCATTCAAATGTGAAATTTGTTCAAAATGTTACCCACAAGAAAAGGATTTGAAAAAGCATATTCAAATTCACACTGGCGAGAAACCTTTTAAATGTAAAGTTTGTTCAAAATATTTCATACGATCCAGTGAATTAAAACAGCATATTCGAATTCACACCGACGAAAAACCTTTTGAGTGTAAGATTTGTTCAAAATGTTTCACACAAAAAGGACATTTAAAACAGCATATTAAAATTCATACTGGTGAAAAACCATTCAGATGTGAAATTTGTTCAAAATGTTTCATAGTATCCGGTGAATTAAAAAAGCATATTCGAATTCACACTGACGAAAAACCTTATAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTACAAAGGCATATTAAAACTCACACCGGTGAAAAATCTTTCAGATGTGAAATTTGTTTAAAATGTTTTATTGCATCCGGTGATTTAAAAAAGCATATTCGAATTCACACTGACAAAAAACCTTATCAATGTAAAATTTCTTCAAAGTGTTTCACAGAACAAGATAATTTAAAACGGCATATTAATTCCCCACTGTTGAAAAGTGAAATTTGCTTAAAATGTTTCGGTGATTTAAAAGGCATTTTAGAACTCACACTAAGAAAATTACCTTTTAAATGCAGTTAA
Protein Sequence: MEDVDYTLMNNKIENCSNDLLSNIKTEEPDIFEESKLEFENLHQFDLCKIKTESYGEKVSPTKSDVLMNRENIKPENIDSNEGMQERKSDTEIKTEITLGLFDFPVFRNDLGENRQTVQTINTYCRKKRSLSATKKSQTYFGKLYGTCSSCGQFFCDKALFLNHFYIYHLLVNSKKPVTLRRSNSATKHVKLEGLDNLNKQMRSHFSENSLSCEICLRHFTKQSSLKRHIRTHTGDKPFKCKICSKCFRQSDYLKSHFRTHTGEKPFRCKICSKCFTQKGSLKEHIIRTHISEKSFKCEICLKCYPREKDLKKHIKVHTGEKPFKCKICSKCFTQSNHLRKHIKNHTDKKPFKCEICSKCFIQSGNLTRHIRTHTGETPFRCEICSKSFIQSGNLKRHIRTHTGEKPFRCEICSKCFTENGSLKEHIIRTHIGIKSFKCEICSKCYPQEKDLKKHIQIHTGEKPFKCKVCSKYFIRSSELKQHIRIHTDEKPFECKICSKCFTQKGHLKQHIKIHTGEKPFRCEICSKCFIVSGELKKHIRIHTDEKPYKCEICSKCFTQNGHLQRHIKTHTGEKSFRCEICLKCFIASGDLKKHIRIHTDKKPYQCKISSKCFTEQDNLKRHINSPLLKSEICLKCFGDLKGILELTLRKLPFKCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056819;
90% Identity: iTF_00056819;
80% Identity: iTF_00056819;