Avir015415.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000766:75401-88177[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.4 2.7e+02 1.8 0.0 22 46 153 177 150 182 0.86 2 8 0.027 2.2 8.5 0.1 21 44 208 231 195 236 0.83 3 8 0.02 1.6 8.9 0.2 21 47 236 262 231 268 0.86 4 8 0.29 23 5.2 0.1 21 45 292 316 278 323 0.83 5 8 0.072 5.7 7.1 0.3 21 52 320 351 316 353 0.92 6 8 0.0039 0.31 11.2 0.0 21 45 368 392 360 399 0.85 7 8 0.0023 0.18 11.9 0.1 21 48 396 423 392 427 0.86 8 8 1 79 3.5 0.1 21 44 424 447 421 450 0.91
Sequence Information
- Coding Sequence
- ATGTTGATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATGGAAATTAAGACAGACATTACACACCGTCCATTTAATTTCTCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCGACACAGTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACCATGGAACCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTATAAAAAATCTGATAATTTGAGAACGAGTAGTTCTGCTACAAAACATATTAACCTAAAAGATTTTAGTAATTTAAAAGAACAGATAAGGACTTACTGCGGACAAAATGGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAGAATTTACACTGGCGAAAAGTCATTCAAATGTAAAATTTGTTCAAAATATTTCAAACATTCCTCTGATTTAAAAGTGCATATTAGAATTCACACTGGTGAAAAACAGTTTAAATGTGAAATTTGTTCAAAATGTTTTGTAAGCTCCGGTGTATTAAAAAATCATATGAGGACTCACACTGATGAAAAACCTTACAGATGTGGAATTTGTTCGAAATGTTTTTCACAATCTAAAGGTTTAAAAAGTCATTTTAGAACTCACACTGACGAGAAACCTTTCAAATGTAAAATTTGTTCAAAATGTTTCAAACATTCCTCTCATTTAAACAGGCACATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTAAAAATTGTTCAAAATGTTTCATAACATCTGGTCGATTAAAAGAGCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTTAAAATCTCCGCTCATTTAAAAAGTCATATTAGAACACACACTGGTGAAAAACCCTTTAAATGTAGTAATTGTTCGAAATGTTTCACACAGTCCAGTCATTTAAAAATGCATATTAAAACTCACACTGCTGCAAAACCAAAATGTTTAAGTTCCAGTGATATGAAAACTCATATTAGAACACATACAGGTGAAAAACCTTTCAGATGTAAAATTTGTTTAAAAGCTTTTATACAATCAGGAGATTTAAAAAGGCATATTAGAACTCATACTGACGAAAAGCCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAGTCCGGTCATTTAAAAAGGCATATTAGAATTCACACTGGCGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTACCCATGAGGGTAGCTTAAAACGACATATTAATAGTTGTGACGGTAAAACGGCCTAA
- Protein Sequence
- MLIQMRVFKKEKAIWKLRQTLHTVHLISLLVEMISIILMKIDTVQTIKMYSWKKRFLSAAKKWHPQFGKYHGTCSFCGQFFCDKLLFLNHFYIYHILVNYKKSDNLRTSSSATKHINLKDFSNLKEQIRTYCGQNGFKRQKDLKQHIRIYTGEKSFKCKICSKYFKHSSDLKVHIRIHTGEKQFKCEICSKCFVSSGVLKNHMRTHTDEKPYRCGICSKCFSQSKGLKSHFRTHTDEKPFKCKICSKCFKHSSHLNRHIKTHTGEKPFKCKNCSKCFITSGRLKEHIRTHTGEKPFKCKICSKCFKISAHLKSHIRTHTGEKPFKCSNCSKCFTQSSHLKMHIKTHTAAKPKCLSSSDMKTHIRTHTGEKPFRCKICLKAFIQSGDLKRHIRTHTDEKPFKCKICSKCFTQSGHLKRHIRIHTGEKPFRCEICSKCFTHEGSLKRHINSCDGKTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056926;
- 90% Identity
- iTF_00056926;
- 80% Identity
- iTF_00056926;