Avir005758.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000204:410079-422653[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.1 8 6.7 0.1 21 44 329 352 321 356 0.88 2 7 0.0071 0.56 10.4 0.1 22 51 358 387 353 390 0.86 3 7 0.0053 0.42 10.8 0.3 21 45 413 437 406 444 0.88 4 7 0.18 14 5.9 0.2 21 45 497 521 489 529 0.86 5 7 0.14 11 6.2 0.2 21 44 553 576 541 580 0.87 6 7 0.0074 0.59 10.3 0.0 21 45 581 605 577 612 0.86 7 7 0.011 0.86 9.8 0.2 21 45 609 633 605 638 0.90
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAATTGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAAACTGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGATAAGTTGTATGAATTCGATTTTTGTACGATCAAAACGGAAAGTTGTGTAGAAAAACAAGATTGTCCAACTAAAACTGATGTTGTGTTAATAAGCAGAGAAACTATAAAAACGAAAAATGTTGATTCAAATGAGAGTATTCAAGAAAGAAAAAGTGATATGGAAAATAAGACAAACATTACAGAGCGTCCATTTGATTTCCCTGTTAGTAGAAATGAAAATCGACAAAGACTGCAAACAATTAAAATGTATTCTTGGAAAAAACTTCAAAAACAGCCATACAAAAATAGTATGTTTAAGAAAGAACCGAAATTCGAATACGAAAACTCACAACAATTCGTAAAAGTGGATAATTCTACTAAAAGTGAAATGTTAAGCAGTGAAAATGGTAAAAGTGAAATAGATAATTCAAGTCAAACTACTCTTGACATGAATCTTGAATTTGAGTGTAAAAAAGAACTATTGCACTCTATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGATTTTGATAAAGAATTACATTCAGAGCGACGTATCAAAAGATATTCCAGGAAACAGGATCCAAGTTCTAAAAAACGTTTTCTATCTGCTGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTACCTCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTGAACTTAAAAAGGAATAATTCTGGCACAAAGCATATTAACCGACAAGATCTTAGTAATTTAAACAAACAGATAAGGGGGCAAAGTTTCACACAACAAAGTGATTTTAAAAAATATATCAAAACACAAACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACATTCCACTAATTTAAAAATTCATATTAGAACTCACACTGGTGACAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACTCAATCCAGTAACTTAAAAACTCATATTAGAATTCACACTGGCGAAAAACCATTTAAATGTAAGTTGTGTTCAAAATGTTTCACAAATTCCAGTAGTTTAATAGTTCATAATAGAACTCACACTGATGAGAAACCTTTTAAATGTAAAATATGTTTGAAATGTTTTAATAGATCCAGTAACTTAAATAGACATATTAGAACTCACACTGACGAGAGACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCAAAAACTCCAGTCACTTAAATATTCATAATAGAACTCACACTAACGAGAAACGTTATAAATGTAAAATTTGTTCGAAATGTTTCACAGATTCCAGTCGTTTAAAAGTTCATAATATAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAGAAACTCCAGTCACTTAAATATTCATATTAGAACTCACACAGGCGAAAAACCATTTAAATGTAAGTTTTGTTCAAAATTTTTCACAGATTCCAGCAGTTTAAAAGTTCATAATAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAATAGTTCCAGTACCTTAAATAGACATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAAAGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCATTTAAATGTAAAATTTGTTCGAAGTGTTGTACACAATCCGGTAATTTAAAATCTCATATTAAAACTCACACTGAAAAAAACTTTTAA
- Protein Sequence
- MDVFKDASNPLMNNKIESNSKDLLSNIKTEEIDIEECKLEFDKLYEFDFCTIKTESCVEKQDCPTKTDVVLISRETIKTKNVDSNESIQERKSDMENKTNITERPFDFPVSRNENRQRLQTIKMYSWKKLQKQPYKNSMFKKEPKFEYENSQQFVKVDNSTKSEMLSSENGKSEIDNSSQTTLDMNLEFECKKELLHSICDLPDFKMEFQDFDKELHSERRIKRYSRKQDPSSKKRFLSAAKKWQPHFGKFYGTCTSCGKFFYDKLLFLNHFYIYHFFVNSKKSVNLKRNNSGTKHINRQDLSNLNKQIRGQSFTQQSDFKKYIKTQTGEKPFKCKICSKCFTHSTNLKIHIRTHTGDKPFKCKICSKCFTQSSNLKTHIRIHTGEKPFKCKLCSKCFTNSSSLIVHNRTHTDEKPFKCKICLKCFNRSSNLNRHIRTHTDERPFKCKFCSKCFKNSSHLNIHNRTHTNEKRYKCKICSKCFTDSSRLKVHNITHTGEKPFKCKICSKCFRNSSHLNIHIRTHTGEKPFKCKFCSKFFTDSSSLKVHNRTHTDEKPFKCKICSKCFNSSSTLNRHIRTHTDEKPFKCKICSKSFTQSSNLKTHIRTHTGEKPFKCKICSKCCTQSGNLKSHIKTHTEKNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056887;
- 90% Identity
- iTF_00056887;
- 80% Identity
- iTF_00056887;