Avir007700.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000277:416252-417520[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.14 11 6.2 0.1 21 46 30 55 20 61 0.85 2 11 0.14 11 6.2 0.0 21 46 58 83 54 89 0.89 3 11 2.3 1.8e+02 2.3 0.0 22 46 85 109 82 115 0.88 4 11 1.8 1.4e+02 2.6 0.0 22 49 113 140 108 144 0.83 5 11 0.22 17 5.6 0.1 22 45 170 193 164 196 0.91 6 11 0.013 1 9.5 0.0 21 52 197 228 193 228 0.87 7 11 0.034 2.7 8.2 0.1 21 46 225 250 221 252 0.91 8 11 0.087 6.8 6.9 0.1 21 46 295 320 284 323 0.89 9 11 0.1 7.9 6.7 0.1 22 45 338 361 333 368 0.89 10 11 0.14 11 6.2 0.1 22 45 366 389 362 397 0.84 11 11 6.5 5.2e+02 0.9 0.1 21 43 393 415 388 419 0.71
Sequence Information
- Coding Sequence
- ATGGGTGAAAAGTCATTCGAATGTGAAACTTGTTCAAAAAGTTTTATACGATCCAGTGAATTAAAACAGCATATTCGAACTCACACTGGCGAAAAACCTTTTAAATGTACAATTTGTTCAAAATGTTTCTCACAAAACGGACAATTAAAACATCATATTAAAACTCACAGTGATGAAAAACCTTTCAAATGTGAACTTTGTTTAAAATGTTTCACACAAGAAAAGGATTTGAAAAATCATATTAAAATTCATGAGAAACCCTTTAAATGTGAATTTTGTTTAAAAGGTTTCATACAATCCAGTCATTTAAAATTGCATATTCGAATTCACACTAACGAAAAATCTTTTAAATGTGAAATTTGTTCGAAATGTTTTTTTGATTCCGGTCAATTAAAAAGTCATATTGAAACTCACACTGATGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACGAGAAGGTGGCTTAAAAGAGCATAATATTAGAATTCACATTGGTGAAAAGCCATTCAAATGTGAAATTTGCTCAAAATGTTTCTCACAACAAAGCCAATTAAAAAAACATGTTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAATATTTGTTTAAAAGGTTTCAAACAATCCTATCATTTAAAAATGCATATTCGAATTCACACTAACGAAAAGCCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCTGGTCAATTAAAAAAGCATATTCGAATTCACACTGACGAATCTGATAAGTTAAACAACCATATTAGAATTGACACTGTTGAAAAACCTTTTAAATGTAAACTTTGTTCAAAATGTTTCACACGAAACGGACATTTAAAACTTCATATTAGAACTCATACTGGTGAAAAACCTTTCAGATGTGAAATTTGTACAAAATGTTTTGGAATTTCCAGTCATTTAAAAAGGCATATTAAAATTCACACTAAGGAATCTGATAAGTTAAACAACCATATTAGAATTGACACTGGTGAAAAATCTGTCAGATGTGAAATTTGTTCGAAATGTTTTACACAATCCGGTAGTTTAAATAGGCATATTAAAACTCACACTGATGAAAAATCTTTCAGATGTGAAGTTTGTTTAAAATGTTTTACACAATCCGGTAGTTTAAAAAGGCATATAAGAAGTCACACTGGTGAAAAACCTTTCCAATGTGAAATTTGTTCAAAATGTTTCACACTAAAAGGTACCTTAAAAGAGCATATTAGAATTCACACTGACAAATGA
- Protein Sequence
- MGEKSFECETCSKSFIRSSELKQHIRTHTGEKPFKCTICSKCFSQNGQLKHHIKTHSDEKPFKCELCLKCFTQEKDLKNHIKIHEKPFKCEFCLKGFIQSSHLKLHIRIHTNEKSFKCEICSKCFFDSGQLKSHIETHTDEKPFRCEICSKCFTREGGLKEHNIRIHIGEKPFKCEICSKCFSQQSQLKKHVKTHTGEKPFKCNICLKGFKQSYHLKMHIRIHTNEKPFKCEICSKCFIQSGQLKKHIRIHTDESDKLNNHIRIDTVEKPFKCKLCSKCFTRNGHLKLHIRTHTGEKPFRCEICTKCFGISSHLKRHIKIHTKESDKLNNHIRIDTGEKSVRCEICSKCFTQSGSLNRHIKTHTDEKSFRCEVCLKCFTQSGSLKRHIRSHTGEKPFQCEICSKCFTLKGTLKEHIRIHTDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056821;
- 90% Identity
- iTF_00056821;
- 80% Identity
- iTF_00056821;