Avir000469.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001024:38968-57244[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.054 4.2 7.5 0.2 20 46 230 256 218 264 0.84 2 8 0.53 42 4.4 0.0 21 44 287 310 279 314 0.86 3 8 0.022 1.7 8.8 0.0 21 47 315 341 312 346 0.86 4 8 0.073 5.7 7.1 0.0 21 44 343 366 338 370 0.91 5 8 0.0086 0.68 10.1 0.1 22 47 372 397 368 402 0.86 6 8 0.0038 0.3 11.2 0.1 21 47 399 424 395 431 0.89 7 8 2.3 1.8e+02 2.3 0.1 21 51 455 485 450 487 0.84 8 8 2.4 1.9e+02 2.3 0.0 21 46 483 508 479 510 0.87
Sequence Information
- Coding Sequence
- ATGGATGTTTCCACAGAAATAATGAAACATTCCCAAATTAAACTCGAAATAAATGATATATTCGACGAACCAACACCAGATTGCCGTTACTCCGAATTTGGCGAAAAATATCACAATGAAAACATAGAAATTTTTTTCATTAAACGCGAAGAAAACGGAATTTTCAATGAACCAAAATCGGAATTCCGTTCTTTCAATGAGGTGGAATCAAGTTTTGTATCCAGTCCAAAACGAAAATATAATTATGGAAAATATTATCAGACATGTTACTTTTGTGGAAAATTTTTCGTCTATGAAGTACTATTGGTGCATCATTTCTATGTATATCACTTTTTACATACTACCAAAACTGTTAAAGTTATGAAGAATAATGATAACAAGAAACGCAACAAAAAATGCTTAAACCTAAATTATATTTATTACAAAAATTGTTGGAAAATATTTCAGCAAAATCGTTTAACAGTGATTAAAAATAGGAACACAGCTTTTCCTACCCAGGATGAAAAAGTCTCAAAATTTGTATTTAAATTCAAAAGTAAACTAAATTACTGTATGTTTCATAATAGTGAGAAATCAGATAAATATTCTTTAAAAAATAATTTAAGACTACGGACTGAACAATCCGTTAATTTTTATTTAAAACGTTTCATGCAATCATCTAGTTTAACAAAACATCAAAGAATCCGCACGGGTGAAAAACCGTTTAAATGTAGTATTTGTTCAACATTTTTCTCACAAAAATGTAAATTAGAACAACATTTAAGAATTCATATTGCTGAAAAACAGTTTAAATGTAATATTTGTTCAAAATTTTTTTCACGAAATTCTTCTTTAAAATATCATCTAAGAAATCACTCTGGTGAAAAACCGTTTAAATGTAATATTTGTTCAAAACTTTTTACGAAATCGTCTAGTCTAAAAATTCATGTAGGAACTCACACAGGTGAACATCCTTTTGAATGTGATGTTTGTTTAAAACGTTTCTCACAATCATCCAATTTAAAAAAACATCAGAGAATTCACACGGGTGAAAAACCGTTTAAATGTTACATTTGTTCAAAACTTTTCACGCAATCATCTAGTTTAAAAATACATCTAGTAACTCACACTGGTGACCAACCGTTTGAATGTAATGTTTGTTTAAAACGTTTCACTCAATCTTATAATTTAAAAAAACATCAAAGGATTCATACGGGTGAAAAACCGTACAAATGTAATATTTGTTTAAAACCTTTCACACAATCATCTAATTTAAAAATACATCTGCAACGTCACACTGGCGAAAAACGGTTTAAATGTGATATTTGTTCAAAATGTTTCATAGAAAAAAATGAATTAAAAAACCATCAAATAATTCACACGGGTGAAAAACCGTTTAAATGTTATATTTGTTCGCATCAGTTCACACATCGGTCTTCTTTAAAAAATCATCTTAGAATCCACACTGGCGAAAAACCTTTCAAATGTGATATTTGTTCAAATCATTTCACAAACCGATCGTCCTTAAAAAATCATCTTTCAATACATACTGGAGAAACGCTGTTTAAATATGGTTTAACCCATTAG
- Protein Sequence
- MDVSTEIMKHSQIKLEINDIFDEPTPDCRYSEFGEKYHNENIEIFFIKREENGIFNEPKSEFRSFNEVESSFVSSPKRKYNYGKYYQTCYFCGKFFVYEVLLVHHFYVYHFLHTTKTVKVMKNNDNKKRNKKCLNLNYIYYKNCWKIFQQNRLTVIKNRNTAFPTQDEKVSKFVFKFKSKLNYCMFHNSEKSDKYSLKNNLRLRTEQSVNFYLKRFMQSSSLTKHQRIRTGEKPFKCSICSTFFSQKCKLEQHLRIHIAEKQFKCNICSKFFSRNSSLKYHLRNHSGEKPFKCNICSKLFTKSSSLKIHVGTHTGEHPFECDVCLKRFSQSSNLKKHQRIHTGEKPFKCYICSKLFTQSSSLKIHLVTHTGDQPFECNVCLKRFTQSYNLKKHQRIHTGEKPYKCNICLKPFTQSSNLKIHLQRHTGEKRFKCDICSKCFIEKNELKNHQIIHTGEKPFKCYICSHQFTHRSSLKNHLRIHTGEKPFKCDICSNHFTNRSSLKNHLSIHTGETLFKYGLTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056968;
- 90% Identity
- iTF_00056968;
- 80% Identity
- iTF_00056968;