Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000825:97273-101534[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.11 9 6.5 0.1 21 45 225 249 219 256 0.85

2 13 0.0079 0.62 10.2 0.3 21 44 253 276 249 281 0.91

3 13 0.1 8.2 6.6 0.1 21 44 281 304 277 312 0.89

4 13 0.61 48 4.2 0.1 21 45 337 361 329 365 0.89

5 13 7.7 6.1e+02 0.6 0.3 22 44 366 388 361 392 0.85

6 13 0.0056 0.44 10.7 0.1 21 51 393 423 389 425 0.86

7 13 6.1 4.8e+02 1.0 0.0 22 49 422 449 419 453 0.85

8 13 0.21 16 5.7 0.3 25 46 454 475 442 481 0.82

9 13 0.63 50 4.1 0.1 21 46 478 503 474 510 0.85

10 13 3.1 2.4e+02 1.9 0.0 21 45 506 530 502 537 0.84

11 13 0.57 45 4.3 0.1 21 45 534 558 528 566 0.82

12 13 0.0042 0.33 11.1 0.2 21 45 590 614 582 618 0.89

13 13 0.16 13 6.0 0.1 21 45 618 642 614 646 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.11	9	6.5	0.1	21	45	225	249	219	256	0.85
2	13	0.0079	0.62	10.2	0.3	21	44	253	276	249	281	0.91
3	13	0.1	8.2	6.6	0.1	21	44	281	304	277	312	0.89
4	13	0.61	48	4.2	0.1	21	45	337	361	329	365	0.89
5	13	7.7	6.1e+02	0.6	0.3	22	44	366	388	361	392	0.85
6	13	0.0056	0.44	10.7	0.1	21	51	393	423	389	425	0.86
7	13	6.1	4.8e+02	1.0	0.0	22	49	422	449	419	453	0.85
8	13	0.21	16	5.7	0.3	25	46	454	475	442	481	0.82
9	13	0.63	50	4.1	0.1	21	46	478	503	474	510	0.85
10	13	3.1	2.4e+02	1.9	0.0	21	45	506	530	502	537	0.84
11	13	0.57	45	4.3	0.1	21	45	534	558	528	566	0.82
12	13	0.0042	0.33	11.1	0.2	21	45	590	614	582	618	0.89
13	13	0.16	13	6.0	0.1	21	45	618	642	614	646	0.91

Sequence Information

Coding Sequence: ATGGATGTTTTCAAAGATTTATTAAATCCATTAATAAAAAATGAAACCGAAAATAACCCTAACGAATTGTTGGCTGATATTAAAACCGAAGAAATTGATATTTTCGAGGAATCTGAACTCGAATTTGAGAAGTGGCGTCATTTCGACCTTAGTAAGATCAAAACGGAAAATTGTGTAGAAAAAATTGCTCCAACTAAAAGTGATGTTGTGTTAATTAACAAAGATAACATAAAAACCGAAAATGTTTATTCAAATCCGAGCATTCAAGAAAGAAAAAATGATATTAAATCAGAAATCATAGAGCCTATATTTAATTTCTCTTTTGGTGAAAATCGACAGACAGAACAAACTATCAAAACATATCCTACGAAAAAATGTTTCCTCATCGCGAAAAGACACGCCAAACCACACTTCCATGAAACATGTTCCTTTTGTGGGGAATTTTTTTATCATAACTTACTATTTTTTAACCATTTTTATATTTACCACTTTTTAAATAATAGGGAAAAATTTGTTAATTCCAGGAAAAGCAATTCTCCTATAAACCACATTAACGTAAAAGATGTTAGCAATTTAAAAGAACCTATGAGGACTGACAGTCAACACAAGTTCTTTAAATGTAAAATATGTACAAAATGTTTTACACAATATGATCATTTACAAACTCAGACTGGCGAAACACCTTATAAATGCAAAATTTGTTCCAAATGTTTCACACAATCCAGTGATTTAAAAATTCACATTAGAACTCACACTGGTGAAAAACCTTATAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCTCTCATTTAAAAAGACATATTAGAACTCACACAGGTGAAAAACCGTTTAAATGTAAAATTTGTTCCAAATGTTTCACACAATCCAGTGATTTAAAAATTCACATTAGAACTCACACTGGTGAAAAATCTTTTAAATGTAAAACTTGTTCCAAATGTTTTACACAATCAGGTGATTTAAAAATTCATATTAGAACTCACACTGGGGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACGATCCGATTATTTAAAAGCACATCTTAGAAATCACACTGGTGAAAAACGTTTCATATGTGAAATTTGTTCAAAATGTTTCACAGAAACCTCTCATTTAAAAAGGCATATTAGAACTCACACAGGTGAAAAACCATTTAAATGTAAAATTTGTTTCAAATGTTTCACACAATCCAGTGATTTAAAAATTCACATTAGAATTCACACTGGTGAAAAACCTTTTAAATGTAAAACTTGTTCCAAATGTTTTACACGATCCGATAGTTTAAAAACACATATTATAAGGAGCCACACGGGTAAAAAAAATTTCATGTGTGAAATTTGTTCAAAATGTTTCACACAATCCTTTCATTTAAAAAGGCATATTAGAACTCACACAGGTGAAAAACCGTTTAAATGTAAAATTTGTTCCAAATGTTTCACACGATCCAGTGATTTAAAAATTCACATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAACTTGTTCCAAATGTTTTACACAATCAGGTGATTTAAATATTCATATTAGAACTCACAGTGGCGAAAAACCTTTTAAATGTACTATTTGTACAAAATGTTTCTCACGATCTGGTGAATTAAAATTGCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAAATTGTTCAAAGTGTTTCGCACGATCTGATCATTTAAAAACGCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCTCACGATCAAGTAATTTAAAAAGGCATATTAAAAATCACACTGGCGAAAAACCATTTAAATGTAAAATTTGTTCTAAATGTTTCACAGGATCCAATTGTTTAAAAAGGCATATTAAAACACACAGTGAGAAAATACTTACAGCTGTAAGACAAAACTCCTTTAATGGAAAATAA
Protein Sequence: MDVFKDLLNPLIKNETENNPNELLADIKTEEIDIFEESELEFEKWRHFDLSKIKTENCVEKIAPTKSDVVLINKDNIKTENVYSNPSIQERKNDIKSEIIEPIFNFSFGENRQTEQTIKTYPTKKCFLIAKRHAKPHFHETCSFCGEFFYHNLLFFNHFYIYHFLNNREKFVNSRKSNSPINHINVKDVSNLKEPMRTDSQHKFFKCKICTKCFTQYDHLQTQTGETPYKCKICSKCFTQSSDLKIHIRTHTGEKPYKCKICSKCFTQSSHLKRHIRTHTGEKPFKCKICSKCFTQSSDLKIHIRTHTGEKSFKCKTCSKCFTQSGDLKIHIRTHTGEKPFKCKICSKCFTRSDYLKAHLRNHTGEKRFICEICSKCFTETSHLKRHIRTHTGEKPFKCKICFKCFTQSSDLKIHIRIHTGEKPFKCKTCSKCFTRSDSLKTHIIRSHTGKKNFMCEICSKCFTQSFHLKRHIRTHTGEKPFKCKICSKCFTRSSDLKIHIRTHTGEKPFKCKTCSKCFTQSGDLNIHIRTHSGEKPFKCTICTKCFSRSGELKLHIRTHTGEKPFKCKNCSKCFARSDHLKTHIRTHTGEKPFKCKICSKCFSRSSNLKRHIKNHTGEKPFKCKICSKCFTGSNCLKRHIKTHSEKILTAVRQNSFNGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056802;
90% Identity: iTF_00056802;
80% Identity: iTF_00056802;