Avir009324.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000035:1925549-1933733[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.74 58 3.9 0.1 22 45 215 238 211 241 0.88 2 7 0.0058 0.46 10.6 0.1 21 44 242 265 240 269 0.91 3 7 0.0012 0.098 12.8 0.2 21 46 270 295 266 301 0.89 4 7 4.4 3.5e+02 1.4 0.4 26 46 303 323 294 325 0.86 5 7 0.012 0.95 9.6 0.2 20 47 325 352 322 357 0.87 6 7 0.027 2.2 8.5 0.2 23 44 356 377 350 381 0.90 7 7 0.0029 0.23 11.6 0.4 21 45 382 406 378 411 0.90
Sequence Information
- Coding Sequence
- ATGGATGGTTTTAAAGATGCATCGAATCCATTAATGAATAATAAAATTGAAAGTAATCCTTACGAAGTGTTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTAATCTCGAATTCGAGAACTTGCATCAAATTGATTATTATATGATGAAAAGGGAAAGTTGTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATTTTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATTTGATTTTCCTGTTTGTACAAAAACTATCCATGATTTTGTTGAAAATCAACAAAGAGTGCAAACAATCAAAATGTATTCAAGGAAAAAATGTTTCCTATCTGCGGCAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTTTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACGAATATCCTTTAAATGCGAAATTTGTTCAAAATGTTTCACAAATTCTAGTAGTTTCAAAATCCATTTTAAACTTCACACTAACAAGAGACCTTTTAAATGTGAAATTTGTGCAAAATCTTTTGTAAAATCTAATTATTTAAAAAGGCATACTAGAATTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTGAAAAATGTTTCACACAATCCAGTAATTTAAATAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGCGAAATTTGCACAAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGACAAGAAAGCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACTATCAAGTCATTTAAATAGGCATGTTAAAATTCATACTAGCGAGAAACCTATTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTGAAACAGCATATTAGAATTCACATTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAATGATTTAAAAAGGCATATTAGAACTCACACTGGTAAAACCTCACGGTTGTGA
- Protein Sequence
- MDGFKDASNPLMNNKIESNPYEVLSNIKTEEIEIEECNLEFENLHQIDYYMMKRESCEETKSDVLISTENIKTENFNSNEGIQERKSDIEIKKFDFPVCTKTIHDFVENQQRVQTIKMYSRKKCFLSAAKKWHHHFGKFNGTCLYCGQFFCDKLLFLYHFSIYHFIVKSKKSFDLRMNNSATKHIGRISFKCEICSKCFTNSSSFKIHFKLHTNKRPFKCEICAKSFVKSNYLKRHTRIHTGEKPFKCEICEKCFTQSSNLNKHIRTHTNEKPFKCEICTKCFTQSSDLKRHIRIHTDKKAFKCKICSKCFTLSSHLNRHVKIHTSEKPIKCEICSKCFTDQSNLKQHIRIHIDKKPFKCEICSKCFIQSSDLKRHIRTHTGEKPYRCEICSKCFTQSNDLKRHIRTHTGKTSRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056964;
- 90% Identity
- iTF_00056964;
- 80% Identity
- iTF_00056964;