Avir015378.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000763:43445-52441[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.4 1.9e+02 2.3 0.0 21 45 94 118 84 125 0.78 2 9 0.058 4.6 7.4 0.1 21 44 122 145 118 149 0.90 3 9 0.086 6.8 6.9 0.0 21 51 150 180 146 183 0.85 4 9 0.054 4.2 7.5 0.1 20 46 205 231 194 237 0.81 5 9 0.12 9.2 6.5 0.0 21 45 234 258 230 265 0.86 6 9 1.9 1.5e+02 2.6 0.1 21 47 262 288 257 294 0.81 7 9 0.052 4.1 7.6 0.1 21 49 318 346 310 350 0.84 8 9 1.5 1.2e+02 2.9 0.0 21 45 346 370 342 377 0.86 9 9 0.022 1.8 8.8 0.0 21 43 374 396 366 400 0.89
Sequence Information
- Coding Sequence
- ATGATCGTTTGCGAGAAAAATAAGAAAGTCAATATGAATATTTCTGCAATAAAAAAAGAAAAAATCGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTGATCAGATGGAAAAAATTAAAGAACATGAGGTGAATCTTGAATTTGAAATTAAAAAAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAATTATAAAAATATTACCGATAAATCTTTTAAATGTAAAATTTGTTTGAAATATTTCACACAATCCGGTCATTTAAATTGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTTTGTTCTAAATGTTTCGCACAATCCGGTCATTTAAAAAGGCATATTAGAACTCACACGAACGAAAAACCTTTTAAATGTGAAATATGTTCGAAGGGTTTCATACAATCCATTGATTTAAAAAATCATATAAAAACTCACACTAACGAGAAACCTTTTAAATGTGAAAATTGTTCAAAATGTTTCGCACTTTTTGATACTTTAAAAAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTTGCACAATCGGGTGGTTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAAAGCACATTAGAAGTCACACTAATGAGAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATTCAGTAGTTTAAAAAGTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAAATTGTTTAAAATGTTTCACACTTTTTGAATCATTAAAAAAGCATTATAGAACTCACACTGGCGAGAGACCTTTTAAATGTAAAATATGTTCGAAATCTTTCACACAATCCTGTTATTTAAAAAATCATATTAAAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCGATCATTTAAAAAGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAATTGTAAATTATGTTCGAAATCTTTCACACAATCCAGTAATTTAAAAAAACATGAAAACTCACACTAA
- Protein Sequence
- MIVCEKNKKVNMNISAIKKEKIEIIDESKPEFDNFDQMEKIKEHEVNLEFEIKKEELESTIDLPDFKIEFQDSDEELNSERDSTKQEPNYKNITDKSFKCKICLKYFTQSGHLNCHIRTHTGEKPFKCKFCSKCFAQSGHLKRHIRTHTNEKPFKCEICSKGFIQSIDLKNHIKTHTNEKPFKCENCSKCFALFDTLKKHIRTHTNEKPFKCKICSKCFAQSGGLKCHIRTHTNEKPFKCKFCSKCFTESGNLKKHIRSHTNEKPFKCKLCSKSFTQFSSLKSHIRTHTNEKPFKCENCLKCFTLFESLKKHYRTHTGERPFKCKICSKSFTQSCYLKNHIKTHTNEKPFKCKLCSKCFTKSDHLKSHIRTHTGEKPFNCKLCSKSFTQSSNLKKHENSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056953;
- 90% Identity
- iTF_00056953;
- 80% Identity
- iTF_00056953;