Avir001872.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- ken
- Assembly
- None
- Location
- GWHAMMQ00001234:54976-58429[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.46 37 4.5 0.0 26 51 133 158 128 160 0.86 2 11 1.4 1.1e+02 3.0 0.1 22 52 186 216 181 216 0.82 3 11 0.071 5.6 7.1 0.4 21 47 213 239 209 244 0.86 4 11 0.13 10 6.3 0.1 21 52 241 272 238 272 0.86 5 11 0.071 5.6 7.2 0.3 21 47 269 295 266 300 0.86 6 11 0.11 8.5 6.6 0.1 21 52 297 328 293 329 0.87 7 11 0.006 0.47 10.6 0.1 21 52 325 356 322 357 0.88 8 11 0.038 3 8.0 0.1 22 46 354 378 349 380 0.89 9 11 0.012 0.93 9.7 0.3 21 48 381 408 377 412 0.86 10 11 0.15 12 6.1 0.2 21 48 409 436 405 440 0.89 11 11 0.37 30 4.8 0.0 21 45 466 490 462 493 0.89
Sequence Information
- Coding Sequence
- ATGAAAAGGGAAAGTTGTGTAGAAAAAGTTTCTCCAACTAAAAGTGATATGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTATTTCAAATGAGAGTATTCAAGAAAGAAAATGTGATATCGAAATTAAGACAGAAGCTGTCGATAATCGACAAAGAGTGCAAAAAATCAAAATGTATACTAGAAAAAAATGTTTTCTACCAGCGCCAAAAAAGTCTCAACCTCACTTTAGGAAATCATATGGAACATGTCCCTCATGTGGACAATTTTTCTGTGATCAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTATAAAATCTGTTAACTCGAGAAGGAATAATTCTGCTAAAAAATATGTTGGACAAATATCCTTCAAATGCGAAATTTGTTCAAAATGTTTTACACAATCCAGTGATTTAAAAACGCATATTAGAATTCACACTGGTGAAAAACCTTTTAAGCGTGAAATTTTTTCAAAAAGTTTCAAAAATCAAAGTTATTATTTACAAGGTCATATTAGACTTCACACTGACGAGAAATCTTTTAAATGTGAAATTTGTTCAAAATATTTCACGCGACAAGATAACTTAAAACAACATATTAGAATTCACACTAACGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTCAGAAAATCTAGTCATTTAAATATCCATGTTAGAATTCACACTGACGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATATTTCACGCGACAAGATAACTTAAAACAACATATTAGAATTCACACTAACGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTCAGAAAATCTAGTCATTTAAATATTCATGTTAGAATTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACGCGACAAGATAACTTAAAACAACATATTAGAATTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAGACCAAAGTAATTTAAAAAGGCATATTAGAATTCACAATGACGACAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTGATTTAAAAAAGCATATTAGAATTCACAGTGGTGAAAAACCTTACAAATGTGAGATTTGTTCAAAATGTTTCAAAAATTCCAGTGTTTTAAAAAGGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATCTGTTCAAAATCTTTCTCAGAAAATAGAAGCTTAAGGCCCCATATTATTAAAAATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACGACAAAGTGATTTAAAACTACATATTAAAACTCACACTCGGGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAAAATCTAGTGATTTAAAAATGCATGTAAGGATTCACACTGACTAG
- Protein Sequence
- MKRESCVEKVSPTKSDMLISKENIKTENVISNESIQERKCDIEIKTEAVDNRQRVQKIKMYTRKKCFLPAPKKSQPHFRKSYGTCPSCGQFFCDQLLFLNHFYIYHFLVNSIKSVNSRRNNSAKKYVGQISFKCEICSKCFTQSSDLKTHIRIHTGEKPFKREIFSKSFKNQSYYLQGHIRLHTDEKSFKCEICSKYFTRQDNLKQHIRIHTNEKPFICKICSKCFRKSSHLNIHVRIHTDEKPFKCEICSKYFTRQDNLKQHIRIHTNEKPFICKICSKCFRKSSHLNIHVRIHTDEKPFKCEICSKYFTRQDNLKQHIRIHTNEKPFKCKICLKCFTDQSNLKRHIRIHNDDKPFKCEICSKCFTQSSDLKKHIRIHSGEKPYKCEICSKCFKNSSVLKRHIRIHTGEKPYKCEICSKSFSENRSLRPHIIKNHTGEKSFKCEICLKCFTRQSDLKLHIKTHTREKPFKCKICSKCFTKSSDLKMHVRIHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056837;
- 90% Identity
- iTF_00056837;
- 80% Identity
- iTF_00056837;