Avir010408.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000411:652753-663282[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0035 0.28 11.3 0.2 26 51 71 96 62 98 0.85 2 11 3.4 2.7e+02 1.8 0.1 21 45 94 118 90 125 0.84 3 11 2.2 1.8e+02 2.4 0.1 22 44 123 145 118 149 0.87 4 11 0.41 32 4.7 0.4 21 46 150 175 146 182 0.85 5 11 0.014 1.1 9.4 0.1 20 47 205 232 189 237 0.82 6 11 0.049 3.9 7.7 0.1 21 44 234 257 230 261 0.90 7 11 0.076 6 7.1 0.1 21 44 262 285 257 289 0.86 8 11 0.015 1.2 9.3 0.1 18 52 286 321 282 321 0.81 9 11 0.03 2.4 8.3 1.6 21 46 318 343 314 348 0.90 10 11 0.089 7 6.8 0.1 26 44 351 369 345 373 0.90 11 11 0.38 30 4.8 0.3 21 48 374 401 370 402 0.89
Sequence Information
- Coding Sequence
- ATGAAAAAATGTTTTCTACCAGCGCCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTATAAAATCTGTTAACTTGAGAAGAAATAATTTTGCTAAAAAACATATTGGACAAAAATCCTATAAATGCAAAATTTGTTCAAAATGTTTTACACAGTCCGGTAATTTAAAAAGACATATTAGAATTCACTCTGACGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACATCTTCCAATGATTTAAAAATTCATATTAGAACTCACACTGGTAAGAAACCTTTTGAATGTAAAATTTGTACAAAATGTTTCACACGATCCAGTGATTTAAAAGTTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAACTTGTTCAAAATGTTTCCGAAGAGCAGGTCATTTAAATAGACATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAATTTTGTTTAAAATGTTTCACAGATCCCAGTACTTTAACAAATCATATTAAAAGTCACAATAACGAGAGACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTCAAAGTGCCAGTAATTTAAAAAGGCATATCAGAACTCACACTGCCGAGAAACCTTTTGAATGTAAAATTTGTTTAAAATGTTTCACACAATCCGGTAGCTTAAAAACTCATATTAGAAGTCACACTGACGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAGGTCATTTAAAAATGCATGTTAGAAGTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTGTGAGCTCCACTAATTTACAAACACATATTAGAATTCACACGAACGAGAAACCCTTTAAATGTAAAATTTGTTCAAAATGTTGCAGAAACCAAAGTAATTTAAAACATCATATTAGAATTCACACTAACGACAAACTTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGTGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTACAGATGTGAGATTTGTTCAAAATGTTTCTCGCAAAAAACTTACTTAAAAAATCATATAACAAAAAATCATATTTGA
- Protein Sequence
- MKKCFLPAPKKYQPHFGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLVNSIKSVNLRRNNFAKKHIGQKSYKCKICSKCFTQSGNLKRHIRIHSDEKPFKCKFCSKCFTSSNDLKIHIRTHTGKKPFECKICTKCFTRSSDLKVHIRTHTGEKPFKCKTCSKCFRRAGHLNRHIRTHTGEKPFRCEFCLKCFTDPSTLTNHIKSHNNERPFKCKICPKGFQSASNLKRHIRTHTAEKPFECKICLKCFTQSGSLKTHIRSHTDEKPFKCEICSKCFTQSGHLKMHVRSHTDEKPFKCEICSKCFVSSTNLQTHIRIHTNEKPFKCKICSKCCRNQSNLKHHIRIHTNDKLFKCEICLKCFTQSGDLKRHIRTHTGEKPYRCEICSKCFSQKTYLKNHITKNHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056840;
- 90% Identity
- iTF_00056840;
- 80% Identity
- iTF_00056840;