Avir016352.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000862:38620-47281[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.25 20 5.4 0.1 21 46 212 237 204 243 0.83 2 8 0.023 1.9 8.7 0.1 21 46 240 265 236 271 0.87 3 8 0.05 3.9 7.6 0.0 21 45 268 292 264 296 0.91 4 8 0.0083 0.65 10.1 0.0 10 46 312 349 305 355 0.80 5 8 0.057 4.5 7.4 0.2 21 46 352 377 348 383 0.85 6 8 0.017 1.4 9.1 0.1 21 46 380 405 375 412 0.86 7 8 2.4 1.9e+02 2.2 0.0 21 45 408 432 404 439 0.85 8 8 0.51 40 4.4 0.0 21 44 436 459 431 463 0.89
Sequence Information
- Coding Sequence
- ATGGATGGTACCAAAGAAGCATCAAATACATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACCGAAGAAATTGATATGCAAGAATGTAAATTCAAATTTGTGAACTTTAATGTGATGAAAAGGGAAAGTTGTGTAGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTGTTAATAGGTAAAGATAATATAAAAACTGAATATGTTGATCCAAATGAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAACCTACATTTGATTTTCCTGCAAATGCTATCCCTGATTTTGTTGAAAATCGACAAATAGGTCAAACAATCAAAATGTATCCTAGGAAAAAAAGTTTCCTATCAGCGGCAAAAAAATGGCAACCTCATTTTGGAAAATCCTACGGAACATGTTCATCTTGTGGAAAAATTTTCTATGATAAATTTCTATTTTTAAACCATTTTTATATTTACCATTTTTTAGTTAATTCGAAAAAATCTGTGAACTTAAAAAGGAATAATTCTGGCACAAAGCATATTAACCGCCAAGAACAGATAAGGGCGGACAGTTTCACACAGCAAAGTAATTTAAAAAAATGTATTACAACCCACAATGGCGAAAAATCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACGATCCAGTAACTTAAAAACTCATATTAAAACTCACACTGACGAGAAACCATTTAAATGTACAATTTGTTCAAAATGTTTCACACATTCCAGTAGTTTAAAAAGGCATATTAAAACTCATACTGACGAAAAACCTTTTAAATGTAAGTTTTGTTCAAAATGTTTCACACAATCCAGTAACTTAAAATCTCATGTTAAAACTCACACTGGTGAAAAACTTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACATCCCAATACTTTAAAAGTTCATAATAGAACTCACACTGACGAGACACCTTTTAAATGTACAATTTGTTCTAAATTTTTCACACAATCCGCTACTTTAAAAACTCATATTAAAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCCACTACTTTAAAATGTCATATTAGAACACACACTAACGAGAAACCATTTAAATGTACAATTTGTTCAAAATGTTTCACACAATCCGGTATATTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATGTGTTCGAAATGTTTCAAAAATTCCAGTTATTTAAAAATTCATGTTAGAACCCACACTGACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAAAATCCGGTGAATTAAAAACTCATATTAGCACTCACTCTGACGAAAAGCTTTTTAAATGTTAG
- Protein Sequence
- MDGTKEASNTLMNNEIESNPKELLSTIKTEEIDMQECKFKFVNFNVMKRESCVEKVSSTKSDVVLIGKDNIKTEYVDPNEDIEERKCDIEIKTEPTFDFPANAIPDFVENRQIGQTIKMYPRKKSFLSAAKKWQPHFGKSYGTCSSCGKIFYDKFLFLNHFYIYHFLVNSKKSVNLKRNNSGTKHINRQEQIRADSFTQQSNLKKCITTHNGEKSFKCKICSKCFTRSSNLKTHIKTHTDEKPFKCTICSKCFTHSSSLKRHIKTHTDEKPFKCKFCSKCFTQSSNLKSHVKTHTGEKLFKCKICSKCFTHPNTLKVHNRTHTDETPFKCTICSKFFTQSATLKTHIKTHTGEKPFKCKICSKCFTQSTTLKCHIRTHTNEKPFKCTICSKCFTQSGILNRHIRTHTDEKPFKCEMCSKCFKNSSYLKIHVRTHTDEKPFKCKICSKCFTKSGELKTHISTHSDEKLFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056982;
- 90% Identity
- iTF_00056982;
- 80% Identity
- iTF_00056982;