Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000035:1753978-1764431[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.083 6.5 6.9 0.1 27 51 192 216 187 219 0.87

2 16 0.019 1.5 9.0 0.1 18 51 238 272 226 274 0.81

3 16 3.4 2.7e+02 1.8 0.1 21 50 270 299 266 302 0.85

4 16 0.86 68 3.7 0.3 21 51 299 329 295 332 0.84

5 16 0.039 3.1 8.0 0.1 21 51 355 385 350 387 0.87

6 16 0.064 5.1 7.3 0.1 21 48 383 410 379 414 0.87

7 16 0.034 2.7 8.2 0.1 21 51 411 441 407 443 0.87

8 16 4.8 3.8e+02 1.3 0.1 26 45 472 491 455 498 0.83

9 16 0.16 12 6.1 0.2 21 48 495 522 490 526 0.85

10 16 0.014 1.1 9.4 0.1 21 51 523 553 519 556 0.87

11 16 7.3 5.8e+02 0.7 0.1 21 48 551 578 548 581 0.80

12 16 0.1 8.1 6.7 0.3 21 44 580 603 575 607 0.89

13 16 0.015 1.2 9.3 0.1 21 51 608 638 603 640 0.86

14 16 3.6 2.9e+02 1.7 0.1 21 50 636 665 633 668 0.85

15 16 0.7 55 4.0 0.2 21 45 665 689 661 696 0.85

16 16 0.74 58 3.9 0.0 21 46 693 718 689 725 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.083	6.5	6.9	0.1	27	51	192	216	187	219	0.87
2	16	0.019	1.5	9.0	0.1	18	51	238	272	226	274	0.81
3	16	3.4	2.7e+02	1.8	0.1	21	50	270	299	266	302	0.85
4	16	0.86	68	3.7	0.3	21	51	299	329	295	332	0.84
5	16	0.039	3.1	8.0	0.1	21	51	355	385	350	387	0.87
6	16	0.064	5.1	7.3	0.1	21	48	383	410	379	414	0.87
7	16	0.034	2.7	8.2	0.1	21	51	411	441	407	443	0.87
8	16	4.8	3.8e+02	1.3	0.1	26	45	472	491	455	498	0.83
9	16	0.16	12	6.1	0.2	21	48	495	522	490	526	0.85
10	16	0.014	1.1	9.4	0.1	21	51	523	553	519	556	0.87
11	16	7.3	5.8e+02	0.7	0.1	21	48	551	578	548	581	0.80
12	16	0.1	8.1	6.7	0.3	21	44	580	603	575	607	0.89
13	16	0.015	1.2	9.3	0.1	21	51	608	638	603	640	0.86
14	16	3.6	2.9e+02	1.7	0.1	21	50	636	665	633	668	0.85
15	16	0.7	55	4.0	0.2	21	45	665	689	661	696	0.85
16	16	0.74	58	3.9	0.0	21	46	693	718	689	725	0.89

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGCATCAGATTTATTAATGAATAATAAAATCGAAAGTAATCCTAAAGAATTGTTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGATAACTTGCATGAAATTGACTATTATATGATGAAAAGTGAAAGTTCTGAAGAAACTAAAAGTGATGTTTTTATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATATCGAAATTAAGAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTGTCTGTACCGAAAAAGTGGCAACCCCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGTTATTTTTAAATCATTTTTATGTATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAAGAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATATTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACAGGAGCCACTGAATTAAAAGGGCATATTAGAAGTCACACAGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAAAATCCAGTGATTTAAAAAAGCATATTAGAATTCACACAGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCTCAGAAAAAACAACCTTAAAGTCACATATTATTAGAACTCACACTGCAAATAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCACAAGACAAAAAGATTTAAATCGACATATTAGAATTCATACTGGTGAAAAACCTTTTAAATGTGAAACTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAATACAACATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGCCATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTACGTACAATCTGGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACACAATCCAGTGATTTAAAAATGCATATTAGAATTCACACAGATGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTAGAACTCACACTGCAGATAAACTTTTTAAATGTAAAGTTTGTTCGAAATGTTTTCACAATTCCACTAATTTAAAAGTTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCTCAAACCAAAGTAATTTAAAACAACATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTACACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACAGATGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAACAAACAACCTTAAAGTCACATATTATTAGAACTCACGCTGCAGATAAACCTTTTAAATGTAAACTTTGTTCAAAATGTTTCACAAAATCTTGTAATTTAAAACGGCATGTTAGAACTCACACTGACGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCCCACAATCCAGTGATTTAAAAAAGCATATTAGAATTCACACAGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCTCAGAAAAAACAACCTTAAAGTCACATATTATTAGAACTCACACTGCAAATAAACCTTTTAAATGTAAAGTTTGTTCGAAATGTTTTCACCATTCCAATAATTTAAAAATTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGTAGTTTAAAAAGCCATATTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACTTAAAAATGGTTTAAAACAACATATTAGAATTCACACTCGTGAAAAACCCTTTCGAATGTGA
Protein Sequence: MDGFKEASDLLMNNKIESNPKELLSNIKTEEIEIEECKLEFDNLHEIDYYMMKSESSEETKSDVFISTENIKTENGNSNEGIQERKSDIEIKKYDFPVCTKAIHDFVEVGQTVQTIKMYSRKKCFLSVPKKWQPHFGKFYGTCFSCGQFFCDKLLFLNHFYVYHFLVNSKKSVNLRKNNSDKKHIGQMFFKCEICTKYFTQSSDLKRHIRIHTDKKPFKCEICSKCFTGATELKGHIRSHTGEKPFKCKICSKCFTKSSDLKKHIRIHTGEKPYKCEICSKCFSEKTTLKSHIIRTHTANKPFKCKVCSKCFTRQKDLNRHIRIHTGEKPFKCETCSKCFTDQSNLIQHIRIHTGEKPFKCEICSKCFTTSSHLKRHIRIHTGEKPFICKICSKCYVQSGDLNKHIKIHTDEKPFKCEICSKCFTQSSDLKMHIRIHTDEKPYKCEICSKSFSEKTTLKSHIRTHTADKLFKCKVCSKCFHNSTNLKVHVRTHTGEKPFKCEICSKCFSNQSNLKQHIRIHTGEKPFKCEICLKCYTQSGDLKKHIRIHTDEKPYKCEICSKSFSEQTTLKSHIIRTHAADKPFKCKLCSKCFTKSCNLKRHVRTHTDEKPFKCEICSKCFPQSSDLKKHIRIHTGEKPYKCEICSKCFSEKTTLKSHIIRTHTANKPFKCKVCSKCFHHSNNLKIHVRTHTGEKPFKCEICSKCFTTSSSLKSHIKIHTGEKAFKCKICSKCFTLKNGLKQHIRIHTREKPFRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056791;
90% Identity: iTF_00056791;
80% Identity: iTF_00056791;