Avir017701.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000990:27657-30837[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.52 41 4.4 0.1 24 44 105 125 92 130 0.84 2 10 0.026 2.1 8.5 0.0 21 44 130 153 125 157 0.90 3 10 0.1 8.1 6.6 0.1 21 45 158 182 154 189 0.90 4 10 0.11 8.8 6.5 0.0 21 47 214 240 203 245 0.86 5 10 2 1.6e+02 2.5 0.1 21 45 242 266 238 274 0.82 6 10 4.6 3.6e+02 1.4 0.0 21 45 270 294 262 297 0.85 7 10 0.11 9.1 6.5 0.0 21 49 298 326 294 330 0.86 8 10 2.1 1.7e+02 2.4 0.1 21 45 326 350 323 358 0.82 9 10 0.24 19 5.5 0.0 21 44 354 377 346 381 0.89 10 10 0.0072 0.57 10.3 0.1 21 45 382 406 377 412 0.86
Sequence Information
- Coding Sequence
- ATGGATTTAACCAAAGAAAAACTAGAATATGTAATTAAAACAGAAGAAATTGAAATTTTTGATGAATTTGGTGAGAATAATGGAATTATTAATAAAGAAGAAATAAAAATTGATAAATTAAAAGCCGAATTAAATTGTTTCGATCACATAAAACATGAGGTGAATCTTGAATTTGAAATTAAAAAAGAAGAATTACACTCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAATTATGAAAATATTGCCGATAAATCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATTGAGTAATTTAAAAAAGCACATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAACCACATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATTGAGTAATTTAAAAATTCATATTAAAACTCACACTGGAGAAAAATCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAAATTAAAAAATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAAATCATATTAAAACCCACACTAACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGAGTCATATAAAAGCTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGTATCCGGTAAATTAAAAAATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAAATCATATTAAAACCCACACTAACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGAGTCATATAAAAGCTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGTATCCGGTAATTTAAAAAAGCACATTAGAAGTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATCCTGTAATTTAAAAAAACACATTAGCACTCACATGGACAAAAACGCTAAATAA
- Protein Sequence
- MDLTKEKLEYVIKTEEIEIFDEFGENNGIINKEEIKIDKLKAELNCFDHIKHEVNLEFEIKKEELHSTIDLPDFKIEFQDSDEELNSERDSTKQEPNYENIADKSFKCKICSKCFTQLSNLKKHIRTHTGEKPFKCKLCSKCFTQSGNLKNHIRTHTNEKPFKCKICSKCFTQLSNLKIHIKTHTGEKSFKCKLCSKCFTESGKLKNHIKTHTGEKPFKCKLCSKCFTESGNLKNHIKTHTNEKPFKCKICSKCFTQLSHIKAHIRTHTGEKPFKCKLCSKCFTVSGKLKNHIKTHTGEKPFKCKLCSKCFTESGNLKNHIKTHTNEKPFKCKICSKCFTQLSHIKAHIRTHTGEKPFKCKLCSKCFTVSGNLKKHIRSHTNEKPFKCKLCSKSFTQSCNLKKHISTHMDKNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056931; iTF_00057450; iTF_00056895;
- 90% Identity
- iTF_00056895;
- 80% Identity
- iTF_00056895;