Avir003715.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001564:24462-28443[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.16 13 6.0 0.1 21 44 290 313 287 317 0.91 2 9 0.0016 0.13 12.4 0.1 21 45 318 342 313 349 0.84 3 9 1.4 1.1e+02 3.0 0.0 21 44 346 369 342 373 0.90 4 9 1 80 3.5 0.1 21 44 374 397 370 401 0.89 5 9 0.0032 0.25 11.5 0.1 21 46 402 427 398 433 0.86 6 9 0.0091 0.72 10.0 0.0 21 46 430 455 426 462 0.87 7 9 5.3 4.2e+02 1.2 0.1 20 44 457 481 453 487 0.80 8 9 0.45 36 4.6 0.1 21 43 487 509 483 517 0.89 9 9 5 4e+02 1.2 0.1 25 45 519 539 511 541 0.86
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAGTTGAATCTAATTCTAAAGATTTGTTATTCAATATTAAATCCGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGAGAACTTGTATGAATTCGACCTTTGTAAGGTCAAAACGGAAAGTTGTGTAGAAAAAGAAGTTTCTCCAACTAAAACTGATGTTGTGTTAATAAGCAGAGAAACTATAAAAATCGAAAATGTTGATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGACATGAAAATTAAGACAGACATTACACACCGTCCATTTAATTTCTCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCGACAGACAGTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTCTGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTGTAAAAAATCTGTTAATTTGAGAACGAGTAATTATGCTACCAAACGTGTTAACCTAAAAGATTTTGGTAATTTACAAGAACAGATGAGGACTTACAGTGGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCACACTGGTGAAAAACTTTTCAGATGTAAAATTTGTTCAAAATGTTTCACACGAAATGGTGGCTTAAAAGATCATATTATTCGAATTCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAAAACGGATATTTAAAAGATCATATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATCTTCTAGTAATTTAAAAGTTCATATTAGATCTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTAACATCTTCCAGGAATTTAAAAGATCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGATTCCAGTAATTTAAATAGCCATATTAGAACTCACACTGGTGAAAAACCGTTTATTTGTCAAATTTGTTCGAAATGTTTCACAGATTCCAGTAAGTTAAAAGGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAACCTAAAAACTCATATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAAAATTTTATACAATCCAGTGATTTAAAAAGGCATATTAGTACTCACACAGATGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCAAAGTAAAAGGTAGCTTAAAGAATCATATTATTCGAATTCACACTGGTGAAAAACCATTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCGGCCACTTAAAAATACATTCTAAAACTCATACTAACGAAAAACTTTTTAGATGTAAAGTTTGTTCTAAATGTTTCACACAAGAGGGTAGCTTAAAACGGCATATTAATAGTTGTGACGGTAAAACGTCCTAA
- Protein Sequence
- MDVFKDASNPLMNNKVESNSKDLLFNIKSEEIDIEECKLEFENLYEFDLCKVKTESCVEKEVSPTKTDVVLISRETIKIENVDSNEGIQERKSDMKIKTDITHRPFNFSVSRNDIHNFDENRQTVQTIKMYSWKKRFLSAAKKWHPQFGKYSGSCSFCGQFFCDKLLFLNHFYIYHILVNCKKSVNLRTSNYATKRVNLKDFGNLQEQMRTYSGQNSFKRQKDLKQHIKIHTGEKLFRCKICSKCFTRNGGLKDHIIRIHTGEKSFKCEICLKCFTQNGYLKDHIKTHTGEKPFKCKICSKCFTSSSNLKVHIRSHTGEKPFKCKICSKCLTSSRNLKDHIRTHTGEKPFKCKFCSKCFTDSSNLNSHIRTHTGEKPFICQICSKCFTDSSKLKGHIRTHTDEKPFKCKICSKCFTQSSNLKTHIKTHTGEKPFKCKICSKNFIQSSDLKRHISTHTDEKPFRCEICSKCFKVKGSLKNHIIRIHTGEKPFKCKICSKCFTQSGHLKIHSKTHTNEKLFRCKVCSKCFTQEGSLKRHINSCDGKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057021;
- 90% Identity
- iTF_00056880;
- 80% Identity
- iTF_00056880;