Avir009979.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000391:20498-24550[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.033 2.6 8.2 0.0 21 45 111 135 101 143 0.85 2 10 5.7 4.5e+02 1.0 0.0 21 47 139 165 135 171 0.81 3 10 0.56 44 4.3 0.0 21 45 167 191 156 198 0.83 4 10 0.14 11 6.2 0.1 20 45 194 219 187 226 0.81 5 10 0.028 2.2 8.4 0.2 21 44 223 246 219 250 0.90 6 10 0.0039 0.31 11.2 0.1 21 52 251 282 247 284 0.87 7 10 0.81 64 3.8 0.1 22 48 280 306 275 311 0.83 8 10 0.3 23 5.2 0.1 20 44 334 358 325 362 0.85 9 10 0.14 11 6.2 0.1 20 44 362 386 358 390 0.89 10 10 0.022 1.7 8.8 0.1 21 45 391 415 387 422 0.88
Sequence Information
- Coding Sequence
- ATGAATATTTGTGCAATAAAAGAAGAAAAAATCGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTGATCAGATGGAAAAAATTGAAGAACATGAGGTGAATCTTGAATTTGAAATTAAAACAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTAATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAGTTATAAAAATACTGACGATAAATCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGAGTCATATAAAAGCTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATCCGGTAATTTAAAATATCATATTAAAAGTCACACTGGAGAAAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACAGCATTCGGTAGTTTAAAAAGGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAAATTAAAAAAGCACATTAGAAGTCACACTAATGAGAAACCCTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCAGTTATTTAAAATATCATATTAAAAGTCACACTGGAGAAAAACCTTTTAATTGTAAATTATGTTCGAAATGTTTCACACAATCCAGTAATTTAAAATGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAATTGTAAATTATGTTCGAAATGTTTCACACAATCCAATAATTTAAAAAATCATATGAAAACTCACACTAACCAAAAACCATTTAAATGTAAATTATGTTCGAAATGTTTCACAGCATCCGGTAGTTTAAAAAGGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAAATTGTTCAAAATGTTTCACACTTTTTGAATCATTAAAAAAGCATAATAGAACTCACACTGGCGAGAGACCTTTTAAATGTAAAATATGTTCGAAATCTTTCACACAATCCATTATTTTAAAATCTCATATTAGCACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAATTGTTTCACAAAATCCAGTAATTTAAAATGTCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACACAATCCGGTCATTTAAAAAAACACATTAGAACTCACATTAATAAAAACGCTAAGTAA
- Protein Sequence
- MNICAIKEEKIEIIDESKPEFDNFDQMEKIEEHEVNLEFEIKTEELESTIDLPDFKIEFQDSNEELNSERDSTKQEPSYKNTDDKSFKCKICSKCFTQLSHIKAHIRTHTGEKPFKCKLCSKSFTQSGNLKYHIKSHTGEKPFKCKFCSKCFTAFGSLKRHIRTHTNEKPFKCKLCSKCFTESGKLKKHIRSHTNEKPFKCKLCSKCFTQSSYLKYHIKSHTGEKPFNCKLCSKCFTQSSNLKCHIRTHTGEKPFNCKLCSKCFTQSNNLKNHMKTHTNQKPFKCKLCSKCFTASGSLKRHIRTHTNEKPFKCENCSKCFTLFESLKKHNRTHTGERPFKCKICSKSFTQSIILKSHISTHTGEKPFKCKLCSNCFTKSSNLKCHIRTHTNEKPFKCEICSKCFTQSGHLKKHIRTHINKNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056936;
- 90% Identity
- iTF_00056936;
- 80% Identity
- iTF_00056936;