Avir003197.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001453:28513-38027[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.097 7.7 6.7 0.1 22 48 207 233 202 237 0.83 2 7 0.037 3 8.0 0.0 21 45 234 258 231 265 0.87 3 7 0.1 8 6.7 0.1 21 44 262 285 258 289 0.89 4 7 0.0085 0.68 10.1 0.1 21 45 290 314 286 321 0.86 5 7 0.093 7.3 6.8 0.1 21 44 318 341 314 345 0.90 6 7 0.0047 0.37 10.9 0.1 21 44 346 369 342 374 0.90 7 7 0.019 1.5 9.0 0.4 21 44 374 397 368 401 0.87
Sequence Information
- Coding Sequence
- ATGGATATTTCTGTAATAAAGCAAGAAGAAATAGAAATTGTGGATGAATCAAAATCCGAATTACATTTTTTAGATCAGATGGAAATAATTCAAGAACAGCCCTACAACAGTAGCATGTTTAAGAAAGAACCGAAATTCGAATACGAAAACTCGCAACAATTCGTAACAATGGATAATTCTTCAATAAATTCTTTCACTACTAAAAGTGAAATGTTAATTGGCAGTGAAAATGATATTTCAAGTAAAACTAATCTTGAATTTGACATTAAAAAAGTAGAATTGGACTCTATTTGCGATTTACCGGATTTGAAAATAGAATTTCAAAATTGTAACAAACGTCTCCCATCAGCGGCAAAAAAATGGCAAACTGACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATAATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCCGTGAACTTAAAAAGGAATAATTCTGGCACAAAGCATTTTAACCGACAAGATCTTAGTAATTTAAACAAACAGATAAGGACGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCGAAATGTTTCAAAAATTCCAGTAATTTAAAAGATCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACACAATTCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCAGTCACTTAAAAATTCATATAAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCACACAAGCCACTAGTTTAAAACGTCATATTAGAACTCACACTGACGAGAAGCCTTTTAAATGTAACATTTGTTCAAAATGTTTCACAAATTCCAGTAATTTAAATAGCCATATTAGAACTCACACTGATGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTAATTTAAAAACTCATATTAGATCTCACACTGGCGAGAAACCTTTTAAATGCAAAATTTGTTCGAAATGTTTCAATCGTTCCAGTAGTTTAAAAAGACATATTAGAACTCACACTAACTAA
- Protein Sequence
- MDISVIKQEEIEIVDESKSELHFLDQMEIIQEQPYNSSMFKKEPKFEYENSQQFVTMDNSSINSFTTKSEMLIGSENDISSKTNLEFDIKKVELDSICDLPDLKIEFQNCNKRLPSAAKKWQTDFGKFYGTCSSCGKFFYNKLLFLNHFYIYHFFVNSKKSVNLKRNNSGTKHFNRQDLSNLNKQIRTDSFTQQSDLKKYIKTHNGEKRFKCKICSKCFKNSSNLKDHIRIHTDEKPFKCKICLKCFTQFSNLKTHIRTHTDEKPFKCKICSKCFTQSSHLKIHIRTHTDEKPFKCKICLKCFTQATSLKRHIRTHTDEKPFKCNICSKCFTNSSNLNSHIRTHTDEKPFKCEICSKCFTQSSNLKTHIRSHTGEKPFKCKICSKCFNRSSSLKRHIRTHTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056987;
- 90% Identity
- iTF_00056987;
- 80% Identity
- iTF_00056987;