Basic Information

Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000088:1082612-1095852[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.025 2 8.6 0.1 13 46 115 148 110 155 0.84
2 12 1.4 1.1e+02 3.0 0.1 21 46 151 176 147 182 0.84
3 12 0.036 2.9 8.1 0.0 21 46 179 204 171 211 0.81
4 12 1.5 1.2e+02 2.9 0.1 18 45 203 231 196 238 0.70
5 12 0.078 6.2 7.0 0.2 20 47 234 261 224 266 0.81
6 12 0.33 26 5.0 0.1 21 45 263 287 259 290 0.90
7 12 0.015 1.2 9.3 0.0 21 46 291 316 287 322 0.87
8 12 0.047 3.7 7.7 0.2 21 48 319 346 315 352 0.85
9 12 4.4 3.5e+02 1.4 0.1 21 44 347 370 343 378 0.82
10 12 3.2 2.5e+02 1.9 0.0 21 44 375 398 364 402 0.85
11 12 0.1 8 6.7 0.1 22 44 404 426 399 430 0.86
12 12 0.041 3.3 7.9 0.0 21 44 431 454 427 457 0.90

Sequence Information

Coding Sequence
ATGTTAATTATTTATAAAATAATTTTCCAATATATTTCAGCTGAAGAAAAATTCAAAATGGATTTAATTAAAGAAAAACTAGAAAACGTAATTAAAACAGAAGAAATTGAAATTTTCGATGAATTTGGTGAGAATAATGGAATTATTAAAAAAGAAGAAATAAAAATTGATAAATTAAAAGCCGAATTAAATTGTTTCGATCACATAAGTGAAGAACACGAGGTGAATGTTAAATTTGAAATTAAAAAAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGAAACCGAATTATATAAATATTAGCGATAAATGTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCTAGTAATTTAAATACTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTCATTTAAAAAGTCATATTAGAACTCACAGTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAAAGCACATTAGAAGTCACACTAATGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCGCACTTTTTGATACTTTAAAAAAGCATATTAGAACTCACACTAACGAAAAACCATTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCGGTCATTTAAATTGTCATATTAAAACTCACACTAACGAAAAACCTTTTAAATGTAATATTTGTTCGAAATATTTCACAGAATCCTGTCATTTAAAAAAACATATTAAAACTCACACTGGGGAAAAACCATTTAAATGTGAAATTTGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAAAGCACATTAAAACTCACACTGGGGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAAGTAGTTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGGGTCATGTAAAAACTCATATTAGAACTCACACTGGTGAAGAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAAATTAAAAAATCATATTAGAACTCACACAGGCGAGAAACGTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAATCATATTAGAACTCACACGAACGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATATTTTAAACATTCCCGTAGTTTAAAAATTCATATAAAAAATCACTAA
Protein Sequence
MLIIYKIIFQYISAEEKFKMDLIKEKLENVIKTEEIEIFDEFGENNGIIKKEEIKIDKLKAELNCFDHISEEHEVNVKFEIKKEELESTIDLPDFKIEFQDSDEELNSERDSTKQKPNYINISDKCFKCKICSKCFTQSSNLNTHIRTHTGEKPFKCKLCSKCFTKSSHLKSHIRTHSNEKPFKCKLCSKCFTESGNLKKHIRSHTNEKPFKCEICSKCFALFDTLKKHIRTHTNEKPFKCKICSKCFTQSGHLNCHIKTHTNEKPFKCNICSKYFTESCHLKKHIKTHTGEKPFKCEICSKCFTESGNLKKHIKTHTGEKPFKCEICSKCFTQSSSLKCHIRTHTNEKPFKCKICSKCFTQLGHVKTHIRTHTGEEPFKCKLCSKCFTESGKLKNHIRTHTGEKRFKCKICSKCFTQSGNLKNHIRTHTNEKPFKCEICSKYFKHSRSLKIHIKNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00056900;
90% Identity
iTF_00056900;
80% Identity
iTF_00056900;