Avir014650.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000709:355354-372102[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.2 16 5.7 0.1 22 45 219 242 210 251 0.85 2 8 0.023 1.8 8.7 0.0 21 44 274 297 257 303 0.88 3 8 0.21 16 5.7 0.0 21 44 303 326 298 330 0.91 4 8 0.0014 0.11 12.6 0.1 21 44 331 354 327 358 0.90 5 8 0.012 0.92 9.7 0.0 21 45 359 383 355 387 0.91 6 8 1.3 1e+02 3.1 0.3 23 44 389 410 384 414 0.86 7 8 0.02 1.6 8.9 0.9 21 45 415 439 407 445 0.89 8 8 1.8 1.4e+02 2.7 0.0 25 44 447 466 439 470 0.86
Sequence Information
- Coding Sequence
- ATGAAAAAACAGAGCGAGAACAATAACAAAGGAGATATGGATATTTCTGAAATAACGCAAGAAGAAATAGAAATTATGGATGAATCAAAATCCGAATTACATTGTTTCGATCAGATGGAAATAATTCAAGAACAGCCCTACAAAAGTAGTATGTTTAAGAAAGAACCGAAATTCGAATACGAAAACTCGCAACAATTCGTAACAATGGATAATTCTTTAATAAATTCTTTCACTACTAAAAGTGAAATGTTAATTGGCAGTGAAAATGATATTTCAAGTAAAACTAATCTTGAATTTGACATTAAAAAAGAAGAATTACACTCCATTTGCGATTTACCGGGTTTGAAAATGAAACTTCAAAATTGTAACAAACGTTTTCTATCTGCGGCAAAAAAATGGCAACCTCAATTTGGAAAATTCTATGGAACATGTACCTCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTGAACTTAGGAAGGAACAAATCTGCCACAAAACCTATTAACCGTCAAGATCTAAGTATTTTAAACAAACAGATAAGGGCGCACAGTTTCACACAACAAATTTATTTAAAAAAATATATTAAAATACAAACTGACCAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACATTCCAGTAATTTAAAAATTCATATTAGAACTCATACTGACGAAAAATCTTTTATATGTAAATTTTGTTCAAAACGTTTCACTCAACAAAGTGATTTAAAAAAACATATTAGAACCCACACTGGCGAAAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTCACACAAAACGGAAATTTAAAACAGCATATTATTGGAACCCACACTGACGAGAAACCTTTCAAATGTAAGTTTTGTTCAAAATGTTTCACATTTTCCAGTAATTTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAAAGTTTCACACAATCCAGTAATTTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATTTTTCACACAATCCAGTACTTTAAATAGGCACATTAAAACTCACACTGGTGAGAAACGTTTTAAATGTAAAATATGTTTGAAATGTTTCACACAATCCACTACTTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCATTTAATTGTAAAATTTGTTTAAAATGTTTCACACAATCCAGTATATTAAATAGGCATATTAGAACTCACACTGACGAAAAACTTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTAAATTAAAAACTCATATTAGCACTCACACTGACGAAAAGCTTTTTAAGTATAAAATTTGA
- Protein Sequence
- MKKQSENNNKGDMDISEITQEEIEIMDESKSELHCFDQMEIIQEQPYKSSMFKKEPKFEYENSQQFVTMDNSLINSFTTKSEMLIGSENDISSKTNLEFDIKKEELHSICDLPGLKMKLQNCNKRFLSAAKKWQPQFGKFYGTCTSCGKFFYDKLLFLNHFYIYHFFVNSKKSVNLGRNKSATKPINRQDLSILNKQIRAHSFTQQIYLKKYIKIQTDQKPFKCKICSKCFTHSSNLKIHIRTHTDEKSFICKFCSKRFTQQSDLKKHIRTHTGEKPFKCKICSKCFTQNGNLKQHIIGTHTDEKPFKCKFCSKCFTFSSNLNRHIRTHTDEKPFKCKICSKSFTQSSNLNRHIRTHTDEKPFKCKICSKFFTQSSTLNRHIKTHTGEKRFKCKICLKCFTQSTTLKCHIRTHTNEKPFNCKICLKCFTQSSILNRHIRTHTDEKLFKCKICSKCFTQSGKLKTHISTHTDEKLFKYKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056987;
- 90% Identity
- iTF_00056971;
- 80% Identity
- iTF_00056971;