Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001416:42879-49811[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0074 0.58 10.3 0.2 27 52 192 217 187 219 0.94

2 17 0.02 1.6 8.9 0.1 21 46 242 267 237 273 0.86

3 17 2.9 2.3e+02 2.0 0.0 21 46 270 295 266 301 0.85

4 17 1.4 1.1e+02 3.0 0.2 21 45 298 322 293 329 0.84

5 17 0.029 2.3 8.4 0.5 21 52 326 357 322 359 0.90

6 17 5 3.9e+02 1.2 0.1 21 50 354 383 352 387 0.83

7 17 2.3 1.9e+02 2.3 0.5 23 48 385 410 379 414 0.76

8 17 0.2 16 5.7 0.1 21 47 411 437 407 442 0.86

9 17 0.068 5.4 7.2 0.0 21 48 439 466 436 470 0.87

10 17 0.048 3.8 7.7 0.0 21 52 467 498 464 499 0.88

11 17 0.056 4.4 7.5 0.0 21 44 499 522 496 528 0.92

12 17 7.1 5.6e+02 0.7 0.1 21 46 525 550 523 557 0.79

13 17 1.3 1e+02 3.1 0.3 21 46 553 578 541 584 0.75

14 17 0.045 3.6 7.8 0.2 21 48 581 608 578 612 0.87

15 17 0.033 2.6 8.2 0.1 21 52 609 640 607 641 0.88

16 17 1.2 93 3.2 0.6 21 44 641 664 635 668 0.87

17 17 0.014 1.1 9.4 0.2 21 52 669 700 665 701 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0074	0.58	10.3	0.2	27	52	192	217	187	219	0.94
2	17	0.02	1.6	8.9	0.1	21	46	242	267	237	273	0.86
3	17	2.9	2.3e+02	2.0	0.0	21	46	270	295	266	301	0.85
4	17	1.4	1.1e+02	3.0	0.2	21	45	298	322	293	329	0.84
5	17	0.029	2.3	8.4	0.5	21	52	326	357	322	359	0.90
6	17	5	3.9e+02	1.2	0.1	21	50	354	383	352	387	0.83
7	17	2.3	1.9e+02	2.3	0.5	23	48	385	410	379	414	0.76
8	17	0.2	16	5.7	0.1	21	47	411	437	407	442	0.86
9	17	0.068	5.4	7.2	0.0	21	48	439	466	436	470	0.87
10	17	0.048	3.8	7.7	0.0	21	52	467	498	464	499	0.88
11	17	0.056	4.4	7.5	0.0	21	44	499	522	496	528	0.92
12	17	7.1	5.6e+02	0.7	0.1	21	46	525	550	523	557	0.79
13	17	1.3	1e+02	3.1	0.3	21	46	553	578	541	584	0.75
14	17	0.045	3.6	7.8	0.2	21	48	581	608	578	612	0.87
15	17	0.033	2.6	8.2	0.1	21	52	609	640	607	641	0.88
16	17	1.2	93	3.2	0.6	21	44	641	664	635	668	0.87
17	17	0.014	1.1	9.4	0.2	21	52	669	700	665	701	0.87

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTACAATTGAAGAATGTAATCTCGAATTCGATAACTTGCATGAAATTGACTATTATATGATGAAAAAGGAAAGTTCTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATTTTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATAATGAAATTAAGAAATTTGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGGACATGTTTCTCTTGTGGACAATTTTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAATAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACCCAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTTACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCCGAAGAGCAGGTCATTTAAATATACATATTAGAACTCACACTGGTGAAAAACCATTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCGAGTGATTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAATTTTGTCCGAAAGGTTTTCAAATTTCCAGTCATTTAAAAAGGCATATCAGAACTCATACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCCGAAGAGCAGGTCATTTAAATATACATATTAGAACTCACACTGGTGAAAAACCATTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAACTCATATTAGAATTCACACATGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTATTAGAACTCACACTGCAGGCAAACCTTATAAATGTAAAGTTTGTTCCAATTGTTTCACACGACAAAGTGATTTAAATCGACATATTAGAATTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAAAACAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACAACATCTAGCCATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTACGTACAATCTGGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCCTCGGAAAAACCTTTTAAATGTGAAATTTGTTCAGAATGTTTCACAAAATCCAGTGATTTAAAAAAGCATATTCACACATGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTAGAACTCACACTGCAGATAAACCTTATAAATGTAAAGTTTGTTCCAATTGTTTCACACGACAAAGTGATTTAAATCGACATATTATAATTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGCCATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTACGTACAATCTAGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCCTCGGAAAAACCTTTTAGATGTGAAATTTGTTCGAAATGTTACACACGATCCAGTAGCTTAAATACTCATATTAGAACTCATGCTGGTGAAAAACCTTACAAATGTGAAATTTGTTCGAAATGTTACACACAATCCGATGATTTAAAAAAGCATATTAGAATTCACACTCGTGAAAAACCCTTTCGAATGTGA
Protein Sequence: MDGFKEASDSLMNNKIESNPNELLSNIKTEEITIEECNLEFDNLHEIDYYMMKKESSEETKSDVLISTENIKTENFNSNEGIQERKSDNEIKKFDFPVCTKAIHDFVEVGQTVQTIKMYSRKKCFLSVPKKWQPHFGKFYGTCFSCGQFFYDKLLFLNHFYIYHFLVNSKKSVNLRNNNSDKKHIGQMFFKCEICTKCFTQSSDLKRHIRIHTYKKPFKCEICSKCFRRAGHLNIHIRTHTGEKPFRCEICSKCFTQSSDLKKHIRTHTGEKPFKCKFCPKGFQISSHLKRHIRTHTGEKPFKCEICSKCFRRAGHLNIHIRTHTGEKPFRCEICSKCFTQSSSLKTHIRIHTCEKPYKCEICSKSFSEKTTLKSHIIRTHTAGKPYKCKVCSNCFTRQSDLNRHIRIHTGEKPFKCEICSKCFTDQSNLKQHIRFHTGEKPFKCEICSKYFTTSSHLKRHIRIHTGEKPFKCKICSKCYVQSGDLNKHIKIHTDEKPSEKPFKCEICSECFTKSSDLKKHIHTCEKPYKCEICSKSFSEKTTLKSHIRTHTADKPYKCKVCSNCFTRQSDLNRHIIIHTGEKPFKCEICSKCFTTSSHLKRHIRIHTGEKPFICKICSKCYVQSSDLNKHIKIHTDEKPSEKPFRCEICSKCYTRSSSLNTHIRTHAGEKPYKCEICSKCYTQSDDLKKHIRIHTREKPFRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056792;
90% Identity: iTF_00056792;
80% Identity: iTF_00056792;