Avir002656.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001358:119415-120599[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.048 3.8 7.7 0.1 16 47 19 50 15 56 0.87 2 11 4.9 3.9e+02 1.2 0.2 25 46 56 77 50 83 0.83 3 11 3.2 2.5e+02 1.9 0.0 21 44 108 131 101 135 0.84 4 11 0.039 3.1 8.0 0.0 21 48 136 163 132 168 0.84 5 11 1.4 1.1e+02 3.0 0.0 23 48 166 190 163 195 0.84 6 11 0.47 37 4.5 0.0 23 46 194 217 189 223 0.83 7 11 0.96 76 3.5 0.0 21 44 220 243 217 250 0.88 8 11 0.13 10 6.3 0.3 25 48 252 275 246 278 0.87 9 11 2 1.5e+02 2.5 0.0 25 44 281 300 276 306 0.84 10 11 0.022 1.7 8.8 0.0 22 47 306 331 301 336 0.82 11 11 0.0097 0.76 9.9 0.0 21 47 333 358 330 363 0.89
Sequence Information
- Coding Sequence
- ATGCAAAATTTGTTTAAAATCTTTTTACAAAAAGTCACTTTAAAATTGCACATGAAATCTCACACCCGTAAAAACCATCCATATAATTGTGAAATTTGTTTTCACACATTCACACGTGAAAATACTTTAAAACAACATTTGAAAATACACAATGAAAAAAAGGCGAATAAATGTGAAATCTGTTTAACAATTTTTAATTATAAATATCAATTGAAGCAACATATAAGAATACATACTAAAGAAAAGCGATTAAAATGTGAAATCTGTTCACTCACGTTTGGACAAGAAGAAAGTTTAAATAAACATATGATTAAACACACTGGAGAAAAACCATTTGAATGTAAAATTTGTTCACACAAGTTTCTACACAAAGGAAATCTAAATCAACATATGGTGAAACACTCCGGAGAAAAGCCATTTAAATGTGAAATTTGTTCACACTTATTTAAACAAAAATCATCTTTAAAAGGACATATGCTTTTACACATTGGAAAAAAACCATTTAAATGTGAAATTTGTGCACAGACGTTTCAACACAAAGGAAATCTAAATCAACATATGTTGAAACACACCGGCGGAAAGCCATTTAAATGTGAAATTTGTTTAGACACATTTCGACAAAAATCAACTTTGATGGGACATATGCTAATACACACTGGAGAAAAACCATTTCAATGTAAAATTTGTTCACATGCGTTTCGAAAAAAAGGAGCTTTAAATACACATATGATAATACACAGTGAAGAAAAACTATTTAAATGTAATATTTGTTCACACACGTATCGACACAAAGCAAATTTAAAACAACATGTTATGATGAATCACACTGAAGAAAACCAATTCAAATGTGAAATTTGTTTCTACACGTTTCGACATAAAGCAAAATTAAACCAACATATGATGAAACACACTGGAGAAAAGAAATTTAAATGTGAAATTTGTTTAGACACGTTTCGACAGAAAGCAAATTTAATGAAACATATGCTAATACACACTGGAGAAAAACCATTTAAATGTAAAATTTGTTTACAAAAGTTCCGGCAAAAAGGAAATTTAAATACACACATGCTGAAACACACTGGAGAAAAACTTTTTAAATGTTATATTTGTTCGCACACGTATAAACACAAAGCAAGATTAAATCAACATATGATGAAACACACTGGAGAAAAGCCGTTCAAATAA
- Protein Sequence
- MQNLFKIFLQKVTLKLHMKSHTRKNHPYNCEICFHTFTRENTLKQHLKIHNEKKANKCEICLTIFNYKYQLKQHIRIHTKEKRLKCEICSLTFGQEESLNKHMIKHTGEKPFECKICSHKFLHKGNLNQHMVKHSGEKPFKCEICSHLFKQKSSLKGHMLLHIGKKPFKCEICAQTFQHKGNLNQHMLKHTGGKPFKCEICLDTFRQKSTLMGHMLIHTGEKPFQCKICSHAFRKKGALNTHMIIHSEEKLFKCNICSHTYRHKANLKQHVMMNHTEENQFKCEICFYTFRHKAKLNQHMMKHTGEKKFKCEICLDTFRQKANLMKHMLIHTGEKPFKCKICLQKFRQKGNLNTHMLKHTGEKLFKCYICSHTYKHKARLNQHMMKHTGEKPFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056958;
- 90% Identity
- iTF_00056958;
- 80% Identity
- iTF_00056958;