Avir000405.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001009:87525-100237[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.037 3 8.0 0.3 17 44 191 219 186 223 0.86 2 10 0.0011 0.089 12.9 0.2 21 44 224 247 220 251 0.91 3 10 0.31 25 5.1 0.1 21 51 252 282 248 285 0.87 4 10 1.1 87 3.3 0.1 21 44 308 331 293 335 0.89 5 10 0.0028 0.22 11.6 0.1 21 47 336 362 332 367 0.85 6 10 0.58 46 4.2 0.1 21 44 364 387 360 391 0.89 7 10 0.03 2.4 8.4 0.2 18 52 388 423 381 425 0.84 8 10 0.024 1.9 8.6 0.1 22 45 449 472 441 479 0.84 9 10 0.2 16 5.7 0.0 21 44 476 499 471 507 0.86 10 10 0.92 73 3.6 0.2 21 49 504 532 496 537 0.82
Sequence Information
- Coding Sequence
- ATGGATGTTTACAAAGATGGATCTAACCCAGAAATAAGCAATAAAATTGAAACAGATTCTAAAGGTTTATTATCTAATATTAAATCCGAAGAAATTGATATTTTCGAAAAATCTAAACTCGAATTCGAGAACTTGTATCAATTCGACTTTTGTAAGATCAAGACGGAAAATTGTGAAGAAAAAGTTTCTCCAAGTGAGAGTGATGTTGTGTTAATAAGCAGAGAAAGCATAAAAACCGAAAATATTGATTCAAAAAAGGATATGCAAGAAAGAAAAAATGATATCGCAATTAATGATTTTGGTGAAAATCGACAAACAGTACAAGCAATCAAAATGTATTCTAGGAAAAAATGTTTCCTATCTGCGCAAAAAAACTGGCAACGTTACTTTGGAAAATTCTATGGAACATGTTCTTTTTGTGGACAATTTTTCTGTGATAAATTACTATTTTTAAACCATTTCTATATTTATCACTTTTTAGTTAATTCTAAAAAACCTTTTGACTCGAGAAGGAATCATTCTACTACAAAACACATTAACAAACCCGATCTTTGTAATTTAAACGAACAGATGAGGACTCACAGTGAACAAAAATCTTTTAAATGTAAAATTTGTGCGAAATGTTTCAAACAATCCAGTACTTTAAAAAGCCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAGATGTTTTACACAATCCGGTAATTTAAAAAGGCATATTATAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGCTTAAAATGTTTTACACAAAAAGTAAGCTTAAAAGAGCATATTACAATTCACACTGGTGAAAAGCCATTTAAATGTGTAAATTGTTCAAAATGTTTCCCTCGAAAAACGGAATTAAAACTGCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAACCTTTCCATTTACAAAAACATATTAGAACTCACACAGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAGTGTTTCACACAATCAAATAACTTAAAAACTCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCAAACATTCCAGTACTTTAAAATTTCATATTAGAACTCACAGTGACGAGAAACCTCTAAAATGTGAAATTTGTTCAAAATGTTTTACACAAAAAAATAGCTTAAAGGAACATATTAGAATTCACACTGTTGAAAAGCCATTTAAATGTGAAAATTGTTCAAAATGTTTCCCACGACGAAAGAGTTTAAAAAAGCATATTAGAATTCACACTGACGAGAAATCTTTTAAATGCGAAATTTGTTCAAAATGTTTCAGACAATCTTTTGATTTAAAAAAACATGTTAGAACCCATACTGGCGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCAGAGAATCCGGTCACTTAAAAACGCATACAAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAGTGTTTTGCAGAAAAAGCTAGCTTAAAAAAGCATATTAGAGTTCACACTGGTGAAAAGCCATTTAAATGTGAAAATTGTTCAAAATGTTTCGCACGACAAACGGATTTAAAACAGCATATTATTAGAATTCACACTGACGAGAAGCCTTTTAAATGA
- Protein Sequence
- MDVYKDGSNPEISNKIETDSKGLLSNIKSEEIDIFEKSKLEFENLYQFDFCKIKTENCEEKVSPSESDVVLISRESIKTENIDSKKDMQERKNDIAINDFGENRQTVQAIKMYSRKKCFLSAQKNWQRYFGKFYGTCSFCGQFFCDKLLFLNHFYIYHFLVNSKKPFDSRRNHSTTKHINKPDLCNLNEQMRTHSEQKSFKCKICAKCFKQSSTLKSHIRTHTDEKPFKCKICSRCFTQSGNLKRHIITHTGEKPFRCEICLKCFTQKVSLKEHITIHTGEKPFKCVNCSKCFPRKTELKLHIRIHTGEKPFKCEICSKCFTQPFHLQKHIRTHTDEKPFKCKICSKCFTQSNNLKTHIRTHTNEKPFKCEICSKCFKHSSTLKFHIRTHSDEKPLKCEICSKCFTQKNSLKEHIRIHTVEKPFKCENCSKCFPRRKSLKKHIRIHTDEKSFKCEICSKCFRQSFDLKKHVRTHTGEKPFKCEICSKYFRESGHLKTHTRTHTGEKPFRCEICSKCFAEKASLKKHIRVHTGEKPFKCENCSKCFARQTDLKQHIIRIHTDEKPFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056859;
- 90% Identity
- iTF_00056859;
- 80% Identity
- iTF_00056859;