Avir000401.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001009:175602-187578[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.12 9.8 6.4 0.1 22 45 208 231 199 237 0.85 2 9 3.9 3.1e+02 1.6 0.1 22 44 236 258 231 262 0.85 3 9 0.032 2.5 8.3 0.0 21 44 263 286 259 292 0.89 4 9 0.2 16 5.7 0.0 21 44 292 315 288 319 0.91 5 9 0.0013 0.11 12.7 0.1 21 44 320 343 316 347 0.90 6 9 0.01 0.82 9.8 0.0 21 45 348 372 344 378 0.90 7 9 4.5 3.6e+02 1.4 0.2 23 46 378 401 373 407 0.80 8 9 0.0074 0.59 10.3 0.7 21 47 404 430 392 435 0.81 9 9 0.74 58 3.9 0.0 21 44 432 455 428 459 0.89
Sequence Information
- Coding Sequence
- ATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAGAACCGAAGAAATTGAAATGGAAGAATGTAAATTTAAATTTGAGAACTTTTATGTGATGAAAAGGGAAAGTTCGGTAGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATCCAAATGAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTTCCTGCAAATGCTATCCATGATTTTGTTGAAAATCGACAAACAGGGGAAACAATCAAAATGTATCCTAGGAAAAAAAGTTTTCTATCTGCGGCAAAAAAATGGCAACCTCACTTTGGAAGATTCTATGGAACATGTACCTCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTGTACTTAGGAAGGAACAAATCTGCCACAAAACCTATTAACCGTCAAGATCTAAGTATTTTAAATAAACAGATAAGGGCGCACAGTTTCACACAACAAATTTATTTAAAAAAATATATTAAAATACAAACTGACCAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACATTCCAGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAAAAATCTTTTATATGTAAAATTTGTTCAAAACGTTTCACACAACAAAGTGATTTAAAAAAACATATTAGAACCCACACTGGCGAGAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTCACACAAAACGGAAATTTAAAACAGCATATTATTGGAACCCACACTGACGAGAAACCTTTCAAATGTAAGTTTTGTTCAAAATGTTTCACATTTTCCAGTAATTTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGCAAAATTTGTTCAAAAAGTTTCACACAATCCAGTAATTTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATTTTTCACACAATCCAGTACTTTAAATAGGCATATTAAAACTCACACTGGTGAGAAACGTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCACTACTTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCATTTAATTGTAAAATTTGTTTAAAATGTTTCACACAATCCAGTATATTAAATAGGCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGAATCCGGTAAATTAAAAACTCATATTAGCACTCACACTGACGAAAAGCTTTTTAAGTAA
- Protein Sequence
- MNNEIESNPKELLSTIRTEEIEMEECKFKFENFYVMKRESSVEKVSSTKSDVVLISKENIKTENVDPNEDIEERKCDIEIKTEATFDFPANAIHDFVENRQTGETIKMYPRKKSFLSAAKKWQPHFGRFYGTCTSCGKFFYDKLLFLNHFYIYHFFVNSKKSVYLGRNKSATKPINRQDLSILNKQIRAHSFTQQIYLKKYIKIQTDQKPFKCKICSKCFTHSSNLKSHIRTHTDEKSFICKICSKRFTQQSDLKKHIRTHTGEKPFKCKICSKCFTQNGNLKQHIIGTHTDEKPFKCKFCSKCFTFSSNLNRHIRTHTDEKPFKCKICSKSFTQSSNLNRHIRTHTDEKPFKCKICSKFFTQSSTLNRHIKTHTGEKRFKCKLCSKCFTQSTTLKCHIRTHTNEKPFNCKICLKCFTQSSILNRHIRTHTNEKPFKCKICSKCFTESGKLKTHISTHTDEKLFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056959;
- 90% Identity
- iTF_00056959;
- 80% Identity
- iTF_00056959;