Avir016428.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000871:52332-62520[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0074 0.59 10.3 0.3 21 44 191 214 177 218 0.85 2 11 0.0017 0.14 12.3 0.1 20 45 218 243 214 250 0.85 3 11 1.1 85 3.4 0.0 21 44 247 270 243 274 0.88 4 11 0.039 3.1 8.0 0.1 21 46 275 300 271 308 0.86 5 11 2.8 2.2e+02 2.0 0.1 21 43 303 325 299 330 0.87 6 11 0.00055 0.043 13.9 0.2 14 46 323 356 319 362 0.81 7 11 0.04 3.2 7.9 0.2 23 45 361 383 355 392 0.86 8 11 0.094 7.4 6.8 0.5 22 45 388 411 383 418 0.86 9 11 0.59 47 4.2 0.0 22 46 416 440 411 447 0.83 10 11 0.76 60 3.9 0.4 21 45 471 495 459 502 0.83 11 11 0.52 41 4.4 0.0 21 44 499 522 495 525 0.89
Sequence Information
- Coding Sequence
- ATGGATGTTTTTAAAGGAAAAATTAAAATAGAGGAAGAGTTTTATGATCAATTCCAAGTCGAAAATCAGAACTGTTCTCAAACTGAAATGGATATTGGTTTTAATGTATTAAAGGAAGAACTTTTAGACCCAGTTGGTGCTTTTTCCGAAGTGAAAAATAACTCTAATAATGAATTAGATTTAAAAGAAAGATCGTTTTATTCTGAAGGTTTTCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGTAACGTGCTCATCTTGTGGAAAATTCTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCACAAAGCATATTAACAGACAAGATCTTAGTAATTTAAACAAACAGATAGGGGCGGACAATTTCACACAACAAAGGAATTTTAAAAAATATATTAAAACCCACATTGCCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAGGTTTCACAAGACCCAGTCACTTAAAAGCTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAGAAATTCCAGTAACTTAAACAGTCATATTAGTACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACAGTCTATTAGTTTAAAAAGACATATTAGAACTCACACTGACGAGAAACCTTATAAATGTAAAATATGTTCGAAATGTTTCACAGATTCCAGTGGATTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAATATTCTATTAGTTTAAAAAGACATATTACAACTCACACTGATGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACAGATTCCAGTGGATTAAAAAGTCATAGTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTAGTAATTTAAATAGGCATATTAGAACTCACACTGATGGGAAACCTTTTAAATGTAAAATATGTTCAAAATGTTTCACAGAATCCAGTAATTTAAATAGGCATATTAGAACACACACTGACGAGAAACATTTTAAATGTAAAATATGTTCGAAATGTTTCAGACAATCCAGTCATTTAAAAAGTCATATTAGAACTCACACGGGCGAAAAAACTTTTAAATGTAACATTTGTTCGAAATTTTTTACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGGTGATAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACGACCCAGTCACTTAAAAACCCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCAATCGTTCCAGTTGCTTAAAAGTTCATATTAGAACTCATACTGACGAGAAACCTTTCAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTTTTAGTTTAAAAAGTCATATTAAAACCCACTGA
- Protein Sequence
- MDVFKGKIKIEEEFYDQFQVENQNCSQTEMDIGFNVLKEELLDPVGAFSEVKNNSNNELDLKERSFYSEGFLSAAKKWQPHFGKFYVTCSSCGKFFYDKLLFLNHFYIYHFFVNSKKSVNLRRNNSGTKHINRQDLSNLNKQIGADNFTQQRNFKKYIKTHIAEKPFKCKICSKGFTRPSHLKAHIRTHTDEKPFKCKICSKCFRNSSNLNSHISTHTDEKPFKCEICSKCFKQSISLKRHIRTHTDEKPYKCKICSKCFTDSSGLKSHIRTHTDEKPFKCEICSKCFKYSISLKRHITTHTDEKPFKCKICSKCFTDSSGLKSHSRTHTDEKPFKCEICSKCFKHSSNLNRHIRTHTDGKPFKCKICSKCFTESSNLNRHIRTHTDEKHFKCKICSKCFRQSSHLKSHIRTHTGEKTFKCNICSKFFTQSSHLKTHIRTHTGDKPFKCKICSKCFTRPSHLKTHIRTHTDEKPFKCEICSKCFNRSSCLKVHIRTHTDEKPFKCEICSKCFKHSFSLKSHIKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056811;
- 90% Identity
- iTF_00056811;
- 80% Identity
- iTF_00056811;