Avir002568.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001331:200939-202069[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.92 9.7 0.1 21 47 36 62 28 67 0.86 2 11 0.037 2.9 8.1 0.1 21 46 64 89 62 95 0.90 3 11 0.21 16 5.7 0.0 22 52 93 123 90 124 0.84 4 11 0.035 2.7 8.1 0.1 21 46 120 145 116 152 0.89 5 11 1.1 88 3.3 0.0 21 46 177 202 172 208 0.83 6 11 0.059 4.7 7.4 0.1 21 51 205 235 201 237 0.86 7 11 0.3 23 5.2 0.1 21 48 233 260 230 263 0.88 8 11 0.045 3.6 7.8 0.0 22 46 263 287 258 293 0.90 9 11 0.22 17 5.6 0.0 22 50 291 319 288 321 0.83 10 11 0.021 1.7 8.8 0.1 21 52 318 349 315 350 0.87 11 11 6.2 4.9e+02 0.9 0.4 22 48 347 373 345 376 0.84
Sequence Information
- Coding Sequence
- ATGCATGTTAAAATTCACACTAACGAGAAACTTTTTAAATGTGAAATTTGTTCAAAAGGTTTTTCACGATTTGATCATTTAAAAACGCATGTTAAAATTCACAGTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAAAAAGGCATATTATAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGCCATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAATCTTTTATATGTAAAATTTGTTCCAAATATTTCGTACAATCCAGTGATTTAAATAAGCATATTAAAATTCACACTGGAGAAAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGTCATTTAAAAATGCATATTAGAATTCACACTTGTGAAAAAACTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAAGTTTAAAGCTACATATTGTTAGAACTCACACTGCAGAAAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCACAGGACAAAGTGATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAAAACAACATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGCAAAAAGAAGCTTAAAGCAGCATATTATTAAAACTCACATTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGTAATTTAAAAATGCATGTTAAAATTCATACTGGCGAGAAAGCTTTCAAATGTAAAATTTGTTCAAAATGTTTCGTACAATCCGGTGATTTAAATAAGCATATTAAAATTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACGATCAAATAATTTAAATACGCATGTTAAAATTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAAGATTAAAACAGCATATTATTAGAGATCACACTACAAAATGA
- Protein Sequence
- MHVKIHTNEKLFKCEICSKGFSRFDHLKTHVKIHSNEKPFKCKICSKCFTDQSNLKRHIIIHTGEKPFKCEICSKCFTTSSHLKRHIRIHTGEKSFICKICSKYFVQSSDLNKHIKIHTGEKPFKCEICLKCFTQSGHLKMHIRIHTCEKTYKCEICSKSFSEKTSLKLHIVRTHTAEKPFKCKVCSKCFTGQSDLNRHVKTHTGEKPFKCEICSKCFTDQSNLKQHIRIHTGEKPYKCEICSKSFSAKRSLKQHIIKTHIGEKPFKCEICSKCFTTSSNLKMHVKIHTGEKAFKCKICSKCFVQSGDLNKHIKIHTGEKPFKCEICSKCFTRSNNLNTHVKIHTGDKPFRCEYCSKCFTENRRLKQHIIRDHTTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056827;
- 90% Identity
- iTF_00056827;
- 80% Identity
- iTF_00056827;