Avir003576.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001520:66167-89214[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.9 2.3e+02 2.0 0.0 21 46 217 242 206 248 0.75 2 11 0.69 54 4.0 0.0 21 45 245 269 241 276 0.86 3 11 0.0061 0.48 10.6 0.1 21 44 273 296 269 300 0.90 4 11 0.049 3.9 7.7 0.1 21 48 301 328 297 332 0.86 5 11 0.0061 0.49 10.6 0.1 21 45 329 353 325 359 0.90 6 11 0.25 20 5.4 0.1 22 46 362 386 353 392 0.83 7 11 0.13 10 6.4 0.4 21 45 389 413 385 420 0.86 8 11 0.91 72 3.6 0.1 21 44 417 440 413 444 0.89 9 11 0.16 13 6.0 0.0 21 44 445 468 441 476 0.87 10 11 3.6 2.8e+02 1.7 0.0 21 44 473 496 470 500 0.86 11 11 0.0084 0.67 10.1 0.1 21 44 501 524 497 528 0.90
Sequence Information
- Coding Sequence
- ATGAATGATTCCAAACAAACAACAAAACCTGAAATTAAACTCGAACAAATCAAAATTTTAGATGAGTTTGGCGAATACGGAAATAATCACAAAGAAAATATGGAAGAAAAAATAGAATCAAAACCCGAATTGCATTGTTTCGATCAGATTGAAATAATTCAAGAACATCCCTACACAAGTAGTATGTTTAAGAGAGAACCGAAATTCGAATATGAAAACTCGCAAGAATTCGTAATGATGGATAATTCTTCAATAAATTCTTTTACTACTAAAAGTGAAATATTAATAAGCAGTGAAAATGATAAAAGTGAAACTACTCTTGAGATAAATCTTGCATTTGACAGTAAAAAAGAACTATTGCACTCGATTTGCGATTTACCGGATTTTAAAATGGAATTACAAGATTTTGATGAAGAATTACGTTTAGAGCGACGCATCAAAACATATTCCAAGAAACAGGGTCCAAGTTGTAAAAAACGTTTCCTATCTGCGGAAAAAAAATGGCTACCACAGTTTGGAAAATGCTTTGGAACATGTTTCTCTTGTGGAAAATTTTTCTATGATAAATTGCTATTTTTATACCATCTAAATATTTACCACTTTTTAGTTAAGTCCAGAAAACCTGTTAACTTACGAAGGAATAATTTTGGGGAAAATTCAGTCAGTTGTGAAATTTGTTTAAAACGTTTCACACGACAAAGTGATTTAAAAAAACATATTAAAACCCACACTGGCGAAAAACCGTTTAAATGTAAGATTTGTTCGAAGTGTTTCACATTGTCTGGTAATTTAGTAACTCATATTAGAACTCACACTGACGAAAAACCTTTTAAGTGTAAAATTTGTTCGAAATGTTTCACACAATCCAGTAATTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCATTCATTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAATCATATCAAAACTCACATCAGAACACACACTGACGAGAAATCTTTTAAATGTAAAATATGTTCGAAATGTTTCAACCGTTCCAGTAATTTGAAAACTCATATTAAAACTCACACTGACGAGAAACCTTTTAAATGTGAAAGTTGTTCGAAATGTTTCAGACAATCCTGTCATTTAAAAACTCATATTAGAACGCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTTAAGAAGTTTCACAATGCAAGCTGATTTAAGAAAACATATTAGAACCCACACTGGAGAAAAACCTTATAAATGTAAAATTTGTTCGATTTGTTTCACGAACACCGGTAATTTAAAAAAACATATTATAACCCACACTGACGAAAAACCGTTTAAATGTAAGATTTGTTCGAAGGGTTTCACATTGTCTTGTAATTTAGTAGTTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCGCACAATCCAGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAATCCGGTGTAA
- Protein Sequence
- MNDSKQTTKPEIKLEQIKILDEFGEYGNNHKENMEEKIESKPELHCFDQIEIIQEHPYTSSMFKREPKFEYENSQEFVMMDNSSINSFTTKSEILISSENDKSETTLEINLAFDSKKELLHSICDLPDFKMELQDFDEELRLERRIKTYSKKQGPSCKKRFLSAEKKWLPQFGKCFGTCFSCGKFFYDKLLFLYHLNIYHFLVKSRKPVNLRRNNFGENSVSCEICLKRFTRQSDLKKHIKTHTGEKPFKCKICSKCFTLSGNLVTHIRTHTDEKPFKCKICSKCFTQSSNLKTHIRTHTDEKPFKCKICSKCFTQSIHLKTHIRIHTDEKPFKCKICSKCFTQSGNLKNHIKTHIRTHTDEKSFKCKICSKCFNRSSNLKTHIKTHTDEKPFKCESCSKCFRQSCHLKTHIRTHTGEKPFRCEICLRSFTMQADLRKHIRTHTGEKPYKCKICSICFTNTGNLKKHIITHTDEKPFKCKICSKGFTLSCNLVVHIRTHTGEKPFKCKICSKCFAQSSNLKSHVRTHTDENPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056875;
- 90% Identity
- iTF_00056875;
- 80% Identity
- iTF_00056875;