Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001617:21264-28221[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.59 46 4.2 0.2 27 48 193 214 188 218 0.85

2 13 0.046 3.6 7.8 0.2 23 44 217 238 213 242 0.90

3 13 0.12 9.4 6.4 0.2 21 48 243 270 239 274 0.86

4 13 0.6 47 4.2 0.1 21 46 271 296 267 299 0.89

5 13 0.017 1.3 9.1 0.2 21 52 299 330 295 330 0.89

6 13 0.016 1.3 9.2 0.2 21 52 327 358 323 358 0.89

7 13 0.014 1.1 9.4 0.1 21 52 355 386 352 387 0.90

8 13 0.0031 0.25 11.5 0.1 21 46 383 408 380 415 0.90

9 13 1.1 89 3.3 0.2 22 46 412 436 409 442 0.84

10 13 0.012 0.94 9.6 0.2 21 46 439 464 428 472 0.82

11 13 6.9 5.4e+02 0.8 0.3 22 45 497 520 492 529 0.82

12 13 0.67 53 4.0 0.1 21 44 529 552 521 559 0.88

13 13 0.092 7.3 6.8 0.1 22 49 558 585 553 589 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.59	46	4.2	0.2	27	48	193	214	188	218	0.85
2	13	0.046	3.6	7.8	0.2	23	44	217	238	213	242	0.90
3	13	0.12	9.4	6.4	0.2	21	48	243	270	239	274	0.86
4	13	0.6	47	4.2	0.1	21	46	271	296	267	299	0.89
5	13	0.017	1.3	9.1	0.2	21	52	299	330	295	330	0.89
6	13	0.016	1.3	9.2	0.2	21	52	327	358	323	358	0.89
7	13	0.014	1.1	9.4	0.1	21	52	355	386	352	387	0.90
8	13	0.0031	0.25	11.5	0.1	21	46	383	408	380	415	0.90
9	13	1.1	89	3.3	0.2	22	46	412	436	409	442	0.84
10	13	0.012	0.94	9.6	0.2	21	46	439	464	428	472	0.82
11	13	6.9	5.4e+02	0.8	0.3	22	45	497	520	492	529	0.82
12	13	0.67	53	4.0	0.1	21	44	529	552	521	559	0.88
13	13	0.092	7.3	6.8	0.1	22	49	558	585	553	589	0.82

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATAAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACAGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGATAACTTGCATGAAATTGACTATTATATTATGATGAAAAGGGAAAGTTCTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATATGATTTCCCTGTTTGTACAAAAGCAATCAATGATTTTGTTGAGGTAGGACAAACTGTGCAAACAATAAAAATGCATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGTTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAATAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGTAATTTGTACAAAATGTTTCACAGAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAATGTTTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTACAAATGTGAGATTTGTTCGAAATGTTTCACAGCATCAGATCATTTAAATAGGCATGTTAGAATTCATACTGGCGAAAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTTATAGAATCCAGTAAATTAAAAACGCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAATACATTAAAAAGACATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTATAGAATCCAATACATTAAAAAGACATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTATAGAATCCAATACATTAAAAAGACATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTGCAAAATGTTTCACAACATCTAGTAATTTAAAAAGGCATGTTAAAATTCACACTGGCGAGAAAGCTTCTAAATGTGAAATTTGTTCAAAATGTTTTACACGAGCCAGTACTTTAAAAAGGCATATGAGAACTCACACTGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCGATGATTTAAAAAAGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGTAAATGGAAGCTTAAAACATCATCTTATTAGAGTTCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTACAACCTACAAAATGATTTAAAACGACATATTAGAACTCACAATATTAGAACTCACACTGCAGATAAACCTTTTAAATGTAAAGTTTGTTCGAAATGTTTTAACAATTCCAGTAATTTAAAAATTCATGTTAGAACTCACACTGGTGAGAAATCTTTTAAATGTAAAATTTGTTCAAAAGATTTCACACAATCCAGTAGTTTAAAAAGACATATGAGAACTCACACTAATAAAAAACCTTTTAAATGTAATTAA
Protein Sequence: MDGFKEASDSLINNKIESNPNELLSNIKTEEIEIEECKLEFDNLHEIDYYIMMKRESSEETKSDVLISTENIKTENGNSNEGIQERKSDIEIKKYDFPVCTKAINDFVEVGQTVQTIKMHSRKKCFLSVPKKWQPHFGKFYGTCFSCGQFFCDKLLFLNHFYIYHFLVNSKKSVNLRNNNSDKKHIGQMFFKCVICTKCFTESSDLKRHIRIHTDKKPFKCKICSKCFTQSNVLKRHIRTHTGEKPYKCEICSKCFTASDHLNRHVRIHTGEKPFKCEICLKCFIESSKLKTHMRIHNNEKPFKCEICSKCFIESNTLKRHMRIHNNEKPFKCKICSKCFIESNTLKRHMRIHNNEKPFKCKICSKCFIESNTLKRHMRIHNNEKPFKCKICAKCFTTSSNLKRHVKIHTGEKASKCEICSKCFTRASTLKRHMRTHTGEKPYRCEICSKCFTQSDDLKKHIRTHTGEKPFRCEYCSKCFTVNGSLKHHLIRVHTGEKSFKCEICLKCYNLQNDLKRHIRTHNIRTHTADKPFKCKVCSKCFNNSSNLKIHVRTHTGEKSFKCKICSKDFTQSSSLKRHMRTHTNKKPFKCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056814;
90% Identity: iTF_00056814;
80% Identity: iTF_00056814;