Avir014261.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000685:20505-29571[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 84 3.4 0.1 22 44 157 179 153 183 0.86 2 10 0.12 9.2 6.5 0.0 21 44 184 207 179 211 0.87 3 10 0.034 2.7 8.2 0.0 21 46 212 237 207 243 0.86 4 10 0.74 59 3.9 0.0 21 44 240 263 236 267 0.90 5 10 0.12 9.9 6.4 0.0 21 44 268 291 263 296 0.89 6 10 0.069 5.4 7.2 0.0 21 51 296 326 292 329 0.87 7 10 0.37 30 4.8 0.0 22 45 353 376 347 383 0.85 8 10 0.17 14 5.9 0.1 21 44 380 403 375 411 0.87 9 10 0.85 67 3.7 0.0 21 44 408 431 403 435 0.89 10 10 0.0021 0.16 12.1 0.1 21 46 436 461 428 466 0.87
Sequence Information
- Coding Sequence
- ATGATATTTCTAGTCAAACTAATCATGATGTCAATATTGAATTTAACATTAAAAAAGAAAAATTGCACTTTGTTTGTGATTTACCGGATTTTAAAAATGGAATTTCAAGATTTTGATGAAGAATTAACTTTAGAGCGAAGCATCAAAAGATATTCCAGGAAACAGGATCCAAGTTGTAAAAAACGTTTCCTATCTACGGCAACAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAAGCATTTTTGTATTTACCACTTTTTCGCTAATTCGAAAAAATCTGTTAGCTTAAAAAGGAATAATTCTGGCATAAAACATATTAACCGACAAAAAAATCTTAGTAATGTAAACAAACAGATAAGAGGGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTTACACAATCCAGTAGCTTAAAAACTCATATTAGAACTCACAGTGATGAGAAACCTTTTAAATGTAAAATTTGCTCGAAATGTTTCACACAGTTGGGTAATTTAAAAACTCATGTTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAAAATGTTTAAAATGTTTCACAGATTCCAGTAATTTAAAAAGACATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTGGATAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTCATTTAAAATATCATATTACAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATGTTAGAATTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATACATTTCAATAGTTTAAAATTTCATATTACAAGTCACACTGGCGACAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATATTAGAACTCATACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAACATCCAGATACTTAAAAACTCATAATAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTGGGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACACAATCAGGTAGTTTAAAAAGACATATTAGAATTCACACTGGTGAAAAATCTTTTAAATGTTAA
- Protein Sequence
- MIFLVKLIMMSILNLTLKKKNCTLFVIYRILKMEFQDFDEELTLERSIKRYSRKQDPSCKKRFLSTATKWQPHFGKFYGTCSSCGKFFYDKLLFLKHFCIYHFFANSKKSVSLKRNNSGIKHINRQKNLSNVNKQIRGDSFTQQSDLKKYIKTHNGEKRFKCKICSKCFTQSSSLKTHIRTHSDEKPFKCKICSKCFTQLGNLKTHVRTHTDEKPFKCKKCLKCFTDSSNLKRHIRTHTGEKPFKCKLCSKCFTQLDNLKSHVRTHTDEKPFKCKICSKCFTQSGHLKYHITTHTGEKPFKCKLCSKCFTKSSNLKTHVRIHTGEKPFKCKICSKCFIHFNSLKFHITSHTGDKPFKCKLCSKCFTKSSNLKTHIRTHTGEKPFKCKICSKCFTTSRYLKTHNRTHTGEKPFKCKLCSKCFTQLGNLKSHVRTHTDEKPFKCKICLKCFTQSGSLKRHIRIHTGEKSFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056916;
- 90% Identity
- iTF_00056916;
- 80% Identity
- iTF_00056916;