Avir006635.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00002341:22336-26243[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.2 92 3.3 0.1 24 52 122 150 108 151 0.81 2 8 0.64 50 4.1 0.1 22 45 148 171 145 174 0.89 3 8 0.0065 0.52 10.5 0.0 21 47 175 201 171 206 0.86 4 8 0.067 5.3 7.2 0.0 21 45 203 227 199 230 0.90 5 8 0.014 1.1 9.5 0.0 21 51 231 261 227 264 0.86 6 8 0.0088 0.7 10.0 0.0 20 48 286 314 276 318 0.82 7 8 0.11 8.9 6.5 0.1 21 52 315 346 311 348 0.86 8 8 0.073 5.7 7.1 0.1 20 45 370 395 358 401 0.83
Sequence Information
- Coding Sequence
- ATGGTTTCGAGAAATCTGCATAGATTGAGTCTACTTGATATTTATTTTCAAAAGCATCAAAAATATCCAATTGATAGGTTAATAAACGAGAAAAATAAGAAAGTCAAAATGGATATTTGTGCAATAAAAGAAGAAAAAATCGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTGATCAGATGGAAAAATGTGAAGAACATGAGGTGAATCTTGAATTTGAAATGAAAAAAGGAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACATAGATCGAGTTATAAAAATATTGACGATAAATCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGAATCTATTAGTTTAAAAAAACATATCAGAATTCACACTAACAAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCATACAATTGAGTAATTTAAAAGATCATATTAATACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAAGCACATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATTTAGTAATTTAAAAGATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAAAACTCACACAAACGAGAAACCTTTTAAATGTGAAAATTGTTCGAAATGTTTCACACTTTTTGATACTTTAAAAAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATCCGGTAATTTAAAAAATCATATGAAAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTTGAAATGTTTCACAGCATCCGGTAGTTTAAAAAGGCATATTAGAACTCACAATAACGATAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACAGAATCCGGTAGTTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAATGTGTTCAAAAAATTTTACACATTCCAGTAATTTAAAAAAACACATTAGAACTCACATTAATAAAAAACTCTAA
- Protein Sequence
- MVSRNLHRLSLLDIYFQKHQKYPIDRLINEKNKKVKMDICAIKEEKIEIIDESKPEFDNFDQMEKCEEHEVNLEFEMKKGELESTIDLPDFKIEFQDSDEELNSERDSTKHRSSYKNIDDKSFKCKICSKCFTESISLKKHIRIHTNKKPFKCKICSKCFIQLSNLKDHINTHTGEKPFKCKLCSKCFTQSGNLKKHIRTHTNEKPFKCKICSKCFTQFSNLKDHIKTHTGEKPFKCKLCSKCFTQSGNLKSHIKTHTNEKPFKCENCSKCFTLFDTLKKHIRTHTNEKPFKCKLCSKSFTQSGNLKNHMKTHTNEKPFKCKLCLKCFTASGSLKRHIRTHNNDKPFKCKFCSKCFTESGSLKCHIRTHTNEKPFKCEMCSKNFTHSSNLKKHIRTHINKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056940;
- 90% Identity
- iTF_00056940;
- 80% Identity
- iTF_00056940;