Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000423:340341-349090[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.59 47 4.2 0.2 22 52 216 246 209 247 0.85

2 13 1 79 3.5 0.1 21 44 243 266 241 270 0.89

3 13 0.023 1.9 8.7 0.0 21 44 271 294 263 298 0.88

4 13 0.038 3 8.0 0.0 21 46 299 324 294 330 0.86

5 13 0.33 26 5.0 0.0 21 44 327 350 323 354 0.90

6 13 0.11 8.4 6.6 0.3 21 46 355 380 351 386 0.86

7 13 0.007 0.55 10.4 0.2 21 47 383 409 378 414 0.86

8 13 0.092 7.3 6.8 0.1 21 45 411 435 409 441 0.91

9 13 0.022 1.7 8.8 0.0 21 46 495 520 488 526 0.86

10 13 6.8 5.4e+02 0.8 0.0 22 47 524 549 521 554 0.83

11 13 0.041 3.3 7.9 0.2 21 46 551 576 547 582 0.87

12 13 1.9 1.5e+02 2.6 0.1 21 44 579 602 575 606 0.88

13 13 0.081 6.4 7.0 0.1 18 44 603 630 596 638 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.59	47	4.2	0.2	22	52	216	246	209	247	0.85
2	13	1	79	3.5	0.1	21	44	243	266	241	270	0.89
3	13	0.023	1.9	8.7	0.0	21	44	271	294	263	298	0.88
4	13	0.038	3	8.0	0.0	21	46	299	324	294	330	0.86
5	13	0.33	26	5.0	0.0	21	44	327	350	323	354	0.90
6	13	0.11	8.4	6.6	0.3	21	46	355	380	351	386	0.86
7	13	0.007	0.55	10.4	0.2	21	47	383	409	378	414	0.86
8	13	0.092	7.3	6.8	0.1	21	45	411	435	409	441	0.91
9	13	0.022	1.7	8.8	0.0	21	46	495	520	488	526	0.86
10	13	6.8	5.4e+02	0.8	0.0	22	47	524	549	521	554	0.83
11	13	0.041	3.3	7.9	0.2	21	46	551	576	547	582	0.87
12	13	1.9	1.5e+02	2.6	0.1	21	44	579	602	575	606	0.88
13	13	0.081	6.4	7.0	0.1	18	44	603	630	596	638	0.84

Sequence Information

Coding Sequence: ATGGATTTTTCCGAAGATAAAACATTTGTACCAAATACATTAATGGAAAATGAAATCGGAAGTTATTCTAAAAAATTTTTACCCGATATTAAAACCGAAAAAATTGATATTTTCGAAGAATCTAAAATACAATTAGAGAACCTTTGCAAGATCAAAACGGAAAGCGATATTGTGTTATTAAGAAAAGAAAATATAAAAAACGAAAATGTTAATTCAAATGAGAATATAAAAGAAATAAACAATGATGTCAAAATAAAGACAGAAATATTTGATTTACCCAATTTTAAAAATGATCTCAATGATTTTGGTGAAAGACTCCGAAAAGGACGAATTACCAAAATAGATTCTAGGAAAAAATGTTTTTTAACTGCGAAACAAATAATGAAATCTAATTTTGGTAAATTGTCTTCGACATGTTCCTTTTGTGGTGAATTTTTTTATGATAAATTATTATTTTTAAACCATTTCTATATTTACCACTTTTTAGTTAATAATCAAAAATGTGTTGATTTGAAAAGGAGTAACGCAAACTTAAAAGAAATTCAATATGAGATTTGTTCTAAAATGTTTGAACGTAATCTGCATTTTAGAAAACGTTTAAAAATAAAAAAATGCCAAATGATAAAGGCTAAAATTCACTCTGGTGAAAAATCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACTTCAAAGATACTTAAAAAAACATCTTAAGATTCACAGCAACGAAAAACCTTATAAATGTAAAATTTGTTTAAAGTGTTTTATAGAATCTAGTTCTTTAAAAACGCATATGAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCTAAAGTGTTTTCCCAATCTAATTCTTTAACAGCACATATTAGAAATCACACAGGCGAAAAACCTTTTAAATGTAAAATTTGTTTAAAAAGTTTCACACATTCAAATTCTTTAAAACGACATATTAGAACTCATACTGGTGAAAAACCATACAAATGCGAAATTTGTTCAAAATGTTTTACAGACTCGAAAGATTTAAAAGGACATATTAGATGTCACACTGGTGAAACTCCTTACAGATGTGAAATTTGTTTAAAATCTTTTACACACTCTAATTCTTTAAAACGTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTTAAACACTCCAAGTCTTTAAAAAGGCATATTATAATTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACAGAATCTGATTCTTTAAAAAGACACATTAAAACTCACTCTAATGAAAAGTCTTTCAGATGCGAAATTTGTTCAAAATCTTTCACAATGCAAAGTTATCTATTAAAACATGTTAAAATTCACTCTACCCAAAAACCTTTTAAATGTAAAACTTGTTCAAAATCCTTCATAGAATCCAGACATTTAATAATACACATTAGAAGTCATACTGGTGAAAAACCTTTCAAGTGCGAAATTTGTTCAAAATGTTTCACAGAATCCAGAGATTTAAAAGGACATATTAGAATTCACACTGGTGAAAATCCATTCAGATGTGAATTTTGTTCAAAATGTTTTACCATAAAAAGTAACTTAAAAAAACATATTATAATTCACACTGGCGAAAAGCCCTTTAAATGTAAAACTTGTTCAAAATGTTTCACTCAATCACATTCTTTAAAACGACATATCAGAACTCACACCGGTGAAAAACCTTTCAAATGCGAAATTTGTACAAAATGTTTTACAGATTCCAGTGTTTTAAAAACACATATTAGAAGTCATACCGGTGAAAAACCTTTCGAGTGCGAAATTTGTTCAAAATGTTTCACAGTATCCAGAGATTTAAAAATACATATTAGAAGTCATACTGGTGAAAATCCTTTCAGGTGTGAAATTTGTTCAAAATGTTTTCTCAGTACAAAGTAA
Protein Sequence: MDFSEDKTFVPNTLMENEIGSYSKKFLPDIKTEKIDIFEESKIQLENLCKIKTESDIVLLRKENIKNENVNSNENIKEINNDVKIKTEIFDLPNFKNDLNDFGERLRKGRITKIDSRKKCFLTAKQIMKSNFGKLSSTCSFCGEFFYDKLLFLNHFYIYHFLVNNQKCVDLKRSNANLKEIQYEICSKMFERNLHFRKRLKIKKCQMIKAKIHSGEKSFRCEICSKCFTLQRYLKKHLKIHSNEKPYKCKICLKCFIESSSLKTHMRTHTGEKPFKCKICSKVFSQSNSLTAHIRNHTGEKPFKCKICLKSFTHSNSLKRHIRTHTGEKPYKCEICSKCFTDSKDLKGHIRCHTGETPYRCEICLKSFTHSNSLKRHIRTHTGEKPFRCEICSKCFKHSKSLKRHIIIHTGEKPFRCEICSKCFTESDSLKRHIKTHSNEKSFRCEICSKSFTMQSYLLKHVKIHSTQKPFKCKTCSKSFIESRHLIIHIRSHTGEKPFKCEICSKCFTESRDLKGHIRIHTGENPFRCEFCSKCFTIKSNLKKHIIIHTGEKPFKCKTCSKCFTQSHSLKRHIRTHTGEKPFKCEICTKCFTDSSVLKTHIRSHTGEKPFECEICSKCFTVSRDLKIHIRSHTGENPFRCEICSKCFLSTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056818;
90% Identity: iTF_00056818;
80% Identity: iTF_00056818;