Avir015157.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000075:185848-188330[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 12 6.1 0.0 21 51 121 151 117 152 0.87 2 11 0.19 15 5.8 0.0 21 46 149 174 145 180 0.86 3 11 0.58 46 4.2 0.1 22 45 178 201 173 208 0.84 4 11 0.91 72 3.6 0.0 21 45 205 229 201 236 0.84 5 11 0.011 0.85 9.8 0.1 21 48 233 260 225 264 0.85 6 11 0.03 2.4 8.4 0.1 21 48 261 288 259 292 0.86 7 11 0.0027 0.22 11.7 0.1 21 46 289 314 285 320 0.85 8 11 2.2 1.8e+02 2.4 0.1 22 44 318 340 313 344 0.88 9 11 0.25 20 5.4 0.0 21 49 345 373 342 376 0.86 10 11 0.21 16 5.7 0.1 21 46 373 398 370 404 0.87 11 11 0.00027 0.021 14.9 0.4 21 46 401 426 397 433 0.85
Sequence Information
- Coding Sequence
- ATGGAATTTCCAGATTTTGATGAAGAATTAAATTTAGAGCGAAGCATCAAAAGATGTTCCAGAAAAGACAATACAAGTTGTCAAAAGCGTTTTCTATCAGCGGCAAAAAAACCTCACTGTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATGATATATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCTAAAAAATCTGTTAACTTAAGAAGGAATAATTTTGGCACAAAGCATATTAACCGACTAGATCTTAGTAATTTAAACAAAGAGATAGGGGCGGACAATTTCACAGAACAAATTAATTTTAAAAAATATATTAAAACCCACATTGCCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAGGTTTCACACGACCCAGTACCTTAAAACGACATATTAGACTTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCAAAGATTCCGGTTATTTAAAAAATCATATTAGAACTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCAAAAATTCCAGTTATTTAAAAACTCATATTAGAAATCACACTAACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAGATTCCAGTGGATTAAAAAGTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATATGTTCGACATGTTTCACGCAATCCGGTCATTTAAAATCTCATATTAAAATTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTCACTTAAAAGCTCATATTAGAATTCACAGTGACGAGAAACCTTTTAAATGTAAAATATGTTCAAAATGTTTCACACAATCCAGTAATTTAAAAACTCATATTAGAACTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAGAATCCAGTCATTTAAAAAGTCATATTATAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACGATCCGGTCATTTAAAATCTCATATTAAAATTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCAGTCATTTAAAAAGTCATATTAAAACTCACAGTGACGAGAAACCTTTTAAATGTAAAATATGTTCAAAATGTTTCAGACAATCAGTTAGTTTAAAAAGACATATTAGAACTCACACTGACAAGAAACCTTTTAAATGTTAA
- Protein Sequence
- MEFPDFDEELNLERSIKRCSRKDNTSCQKRFLSAAKKPHCGKFYGTCSSCGKFFYDILLFLNHFYIYHFFVNSKKSVNLRRNNFGTKHINRLDLSNLNKEIGADNFTEQINFKKYIKTHIAEKPFKCKICSKGFTRPSTLKRHIRLHTDEKPFKCKICLKCFKDSGYLKNHIRTHTDKKPFKCKICLKCFKNSSYLKTHIRNHTNEKPFKCKICSKCFIDSSGLKSHIRTHTGEKPFKCKICSTCFTQSGHLKSHIKIHTDEKPFKCKICSKCFTQSSHLKAHIRIHSDEKPFKCKICSKCFTQSSNLKTHIRTHTDKKPFKCKICLKCFTESSHLKSHIITHTGEKPFKCEICSKCFTRSGHLKSHIKIHTGEKPFKCKLCSKCFTQSSHLKSHIKTHSDEKPFKCKICSKCFRQSVSLKRHIRTHTDKKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056877;
- 90% Identity
- iTF_00056877;
- 80% Identity
- iTF_00056877;