Basic Information

Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000455:349378-354495[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.28 22 5.2 0.1 22 45 188 211 183 214 0.86
2 11 0.073 5.7 7.1 0.1 21 44 215 238 211 242 0.91
3 11 0.14 11 6.2 0.2 21 44 243 266 239 270 0.89
4 11 0.0057 0.45 10.7 0.0 21 45 271 295 267 302 0.86
5 11 0.04 3.1 8.0 0.1 21 44 299 322 295 326 0.90
6 11 0.0037 0.29 11.3 0.1 21 45 327 351 323 358 0.86
7 11 0.75 59 3.9 0.0 21 44 355 378 351 385 0.89
8 11 3.5 2.8e+02 1.7 0.1 22 47 384 409 381 415 0.81
9 11 1.6 1.2e+02 2.8 0.4 23 44 413 434 407 442 0.88
10 11 0.15 12 6.1 0.1 22 45 440 463 435 470 0.83
11 11 0.029 2.3 8.4 0.2 21 47 467 493 463 499 0.86

Sequence Information

Coding Sequence
ATGTTTAAAAAAGAACCGAAATTCGAATACGAAAATTTTCAACAATTGGTAACAATGGATGATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCATGAAATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTACCGGATTTTGATGAAGAATTAAATTTAGAGCGAAGCATCAAAAGATATTCGAGGAAAAAGGATCCAAATTATAAAAAACGTTTTCTATTAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGGACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGCTAATTCGAAAAAATTTGTTAACTTAAGATGGAATAATTCTGGCATAAAACATATTAACCGACAAAATCTTGGTAATGTAAAGAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATCGCGAAAAACGTTTTAAATGTAAGATTTGTTCGAAATGTTTCAAAAATTCCAGTAATTTAAAAGATCATATTAGAATTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACACAATTCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCAGTCACTTAAAAATTCATATAAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATATTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCAATGATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAATAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAATTATGTTCAAAATGTTTCACACAATTGGGTAATTTAAAAACTCATATTAGAACTCATACTGACGAGAAATCTTATAAATGTGAAATATGTTCGAAATGCTTTAAACATTCTATTAGTTTAAAAACTCATATTAGAACTCACACTGACGTGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCTGTATTTTAAAATCTCATATTAGAACTCATACTGACGAGAAATCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAGTTTAAATAGACATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAGTTTAAAAACTCATATTAGAATTCACATTGACGAGAAACCATTTAAATGTATAGTTTATCCAAAACCAATTGAATAG
Protein Sequence
MFKKEPKFEYENFQQLVTMDDSSINSVTIKSENDISSQTNHEINIEFDIKKEELHSVCDLPDFKMELPDFDEELNLERSIKRYSRKKDPNYKKRFLLAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFFANSKKFVNLRWNNSGIKHINRQNLGNVKKQIRADSFTQQSDLKKYIKTHNREKRFKCKICSKCFKNSSNLKDHIRIHTDEKPFKCKICLKCFTQFSNLKTHIRTHTDEKPFKCKICSKCFTQSSHLKIHIRTHTDEKPFKCKICSKYFTQSSNLKTHIRTHTGEKPFKCKICSKCFTQSNDLKSHIRTHTDEKPFKCKICSKCFTQSNNLKSHVRTHTDEKPFKCKLCSKCFTQLGNLKTHIRTHTDEKSYKCEICSKCFKHSISLKTHIRTHTDVKPFKCKICSKCFTQSCILKSHIRTHTDEKSFKCKICSKCFTQSGSLNRHIRTHTDEKPFKCKICSKCFTQSSSLKTHIRIHIDEKPFKCIVYPKPIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00056871;
90% Identity
iTF_00056871;
80% Identity
iTF_00056871;