Avir017169.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000932:151284-158136[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0075 0.59 10.3 0.0 18 51 126 159 119 161 0.82 2 10 1.6 1.3e+02 2.8 0.0 21 45 157 181 155 188 0.84 3 10 0.99 78 3.5 0.0 21 45 185 209 174 216 0.82 4 10 2.2 1.7e+02 2.4 0.0 21 46 213 238 208 244 0.82 5 10 0.01 0.8 9.9 0.0 21 46 241 266 229 273 0.84 6 10 0.94 74 3.6 0.0 21 45 269 293 264 300 0.82 7 10 1.2 92 3.3 0.0 21 45 297 321 289 328 0.84 8 10 0.41 33 4.7 0.1 21 46 325 350 312 357 0.80 9 10 0.54 43 4.3 0.1 21 46 353 378 345 384 0.84 10 10 0.017 1.3 9.2 0.0 21 44 381 404 370 408 0.87
Sequence Information
- Coding Sequence
- ATGTTAATTATTTATAAAATAATTTTCCAATTTATTTCAGCTGAAGAAAAATTCAAAATGGATGTATCCAAAAAAAAACTAGAAGATGGAATTAAAAAGGAAGAAATTGAAATTTTCGATGAATTTGGTGACAATAATGTAATTATTAAAGAAGAAGAAATAGAAATTGATGTATTAAAAGCCAAATTGAATTGTTTCGATAACATCGAAATAATTGAAGAACATGAGGTGAATCTTGAATTTGAGATTAAAAAAGAAGAATTGCACTCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTGTGGTGAAGAATTAAATTCAGATGGAAACATCAATAGAATTTCCACAAAACAAGAACCGAGTTATAAAAATTTTGGCGATAAACCTTTTAAATGTAAAATTTGTTCGAAATCTTTCACACAATCCGGTAATTTAAAAATTCATATTAAAATTCACAGTGACGAGAAACCTTTTAAATGTGAAATTTGTTCGAAAAGTTTCATAAAATCCGGTCATTTAAAAGATCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAAGTTTCATAAAATCCGGTCATTTAAAAGATCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTGAAATATGTTCGAAAGGTTTCACACATTCTGGTAGTCTAAAAATTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCGAAATATTTCACAGAATCCAGTAATTTAAAAAAGCACATTAGAACTCACAGTGACGAGAAACCTTTTAAATGTGAAATATGTTCAAAAGGTTTCACAGAGTCTGGTAGTTTAAAAACTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTGAAATATGTTCAAAAGGTTTCACAGAGTCTGGTAGTTTAAAAACTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTTACAGAATCCAGTTATTTAAAATGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACAACATCTGGTAGTTTAAAAACTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACACAATCCGGTAGTTTAAAAAGGCATCTATTAGATAAAAAAAACATATTAGCACTCACATTGATAAAAACGTAA
- Protein Sequence
- MLIIYKIIFQFISAEEKFKMDVSKKKLEDGIKKEEIEIFDEFGDNNVIIKEEEIEIDVLKAKLNCFDNIEIIEEHEVNLEFEIKKEELHSTIDLPDFKIEFQDCGEELNSDGNINRISTKQEPSYKNFGDKPFKCKICSKSFTQSGNLKIHIKIHSDEKPFKCEICSKSFIKSGHLKDHIRTHTGEKPFKCKICSKSFIKSGHLKDHIRTHTGEKPFKCEICSKGFTHSGSLKIHIRTHTNEKPFKCEICSKYFTESSNLKKHIRTHSDEKPFKCEICSKGFTESGSLKTHIRTHTGEKPFKCEICSKGFTESGSLKTHIRTHTGEKPFKCKICSKCFTESSYLKCHIRTHTGEKPFKCKICSKCFTTSGSLKTHIRTHTNEKPFKCKFCSKCFTQSGSLKRHLLDKKNILALTLIKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056906;
- 90% Identity
- iTF_00056906;
- 80% Identity
- iTF_00056906;