Avir006413.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00002247:12118-25046[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 1.4e+02 2.6 0.1 24 52 218 246 206 247 0.83 2 11 0.55 44 4.3 0.1 22 46 244 268 241 274 0.85 3 11 0.011 0.86 9.8 0.0 21 46 271 296 267 303 0.86 4 11 8.6 6.8e+02 0.5 0.1 21 45 299 323 294 326 0.84 5 11 0.017 1.3 9.1 0.0 21 44 327 350 323 355 0.91 6 11 0.11 9 6.5 0.0 21 45 355 379 351 382 0.90 7 11 0.022 1.8 8.7 0.0 21 49 383 411 380 415 0.86 8 11 0.0078 0.62 10.2 0.0 20 48 438 466 428 470 0.82 9 11 0.89 71 3.6 0.1 21 51 467 497 463 500 0.86 10 11 8.4 6.7e+02 0.5 0.1 21 46 495 520 484 526 0.80 11 11 0.034 2.7 8.2 0.1 20 45 522 547 510 553 0.83
Sequence Information
- Coding Sequence
- ATGGATGGTATCAAAAAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTACCTACTATTAAAACCGAAAAAATTGAAATTGAAGAATGTAAACTCAAATTTCAGAACTTTTATGTGATGAAAAGTGAAAGTTGTGTAGAGAACGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATACAAATAAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGCTATCCATAATTTTGTTGAAAATCGACAAACAGGGCAAAAAATCAAAATGTATTCTAGGAAAAAAAACGAGAAAAATAAGAAAGTCAATATGAATATTTGTGCAATAAAAGAAGAAAAAATCGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTGATCAGATGGGAAAAATTGAAGAACATGAGGTGAATCTTGAATTTGAAATGAAAAAAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTGTGATGAAGATTTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAATTATGAAAATATTGCCGATAAATCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGAATCTATTAGTTTAAAAAAACATATTAGAATTCACACTAACAAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCATACAATTGAGTAATTTAAAAGATCATATTAATACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAAGCACATTAGAAGTCACACTAATGAGAAACCTTTTAAATGTGAAAATTGTTCAAAATGTTTCATACAATTGAGTAATTTAACAGATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAAGCACATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATTGAGTAATTTAAAAGATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAAAACTCACACAAACGAGAAACCTTTTAAATGTGAAAATTGTTCGAAATGTTTCACACTTTTTGATACTTTAAAAAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCAACCAATCCGCTAATTTAAAAAATCATATGAAAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTCGAAACGTTTCGCACAATCCGGTAGTTTAAAATGTCATATTAGAACTCATAATAACGATAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAGTTTAAAATGTCATATTAGAACTCACACTAATGAGAAACCTTTTAAATGTGAAATATGTTCAAAAGATTTTACACATTCCAGTAATTTAAAAAAACACATTAGAACTCACATTAATAAAAAACGTTAA
- Protein Sequence
- MDGIKKASNPLMNNEIESNPKELLPTIKTEKIEIEECKLKFQNFYVMKSESCVENVSSTKSNVVLISKENIKTENVDTNKDIEERKCDIEIKTEATFDFHANAIHNFVENRQTGQKIKMYSRKKNEKNKKVNMNICAIKEEKIEIIDESKPEFDNFDQMGKIEEHEVNLEFEMKKEELESTIDLPDFKIEFQDCDEDLNSERDSTKQEPNYENIADKSFKCKICSKCFTESISLKKHIRIHTNKKPFKCKICSKCFIQLSNLKDHINTHTGEKPFKCKLCSKCFTQSGNLKKHIRSHTNEKPFKCENCSKCFIQLSNLTDHIKTHTGEKPFKCKLCSKCFTQSGNLKKHIRTHTNEKPFKCKICSKCFTQLSNLKDHIKTHTGEKPFKCKLCSKCFTQSGNLKSHIKTHTNEKPFKCENCSKCFTLFDTLKKHIRTHTNEKPFKCKLCSKSFNQSANLKNHMKTHTNEKPFKCKLCSKRFAQSGSLKCHIRTHNNDKPFKCKLCSKCFTESGSLKCHIRTHTNEKPFKCEICSKDFTHSSNLKKHIRTHINKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056876;
- 90% Identity
- iTF_00056876;
- 80% Identity
- iTF_00056876;