Avir017477.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000969:77771-82213[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.056 4.4 7.5 0.3 25 44 215 234 199 238 0.79 2 11 0.0049 0.38 10.9 0.1 21 52 239 270 235 270 0.88 3 11 0.01 0.79 9.9 0.1 21 44 267 290 265 298 0.89 4 11 2.2 1.7e+02 2.4 0.1 21 44 295 318 290 322 0.89 5 11 0.058 4.6 7.4 0.2 16 52 319 354 315 354 0.82 6 11 0.0071 0.56 10.4 0.1 21 44 351 374 348 377 0.92 7 11 0.0029 0.23 11.6 0.3 18 52 377 410 374 410 0.84 8 11 0.096 7.6 6.7 0.1 21 43 407 429 405 434 0.92 9 11 0.64 51 4.1 0.1 21 46 435 460 430 466 0.85 10 11 0.61 49 4.2 0.1 21 44 463 486 459 491 0.90 11 11 0.19 15 5.8 0.5 21 49 491 519 486 523 0.85
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATCAAATCTATTAATGAACAATAAAATCGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAAACCGAACAAATTGATATTTTCGAAGAATCTAAACTCGAATTCGAGAACTTAGATCAATTCGATCTTTGTAAGATCAAAACAGAAAGTTGTGTAGAAAAAAATTCTAAAACTGAAAGTGATGTTGTGTTAATAAGCAGGGAAAATATAAAAACCGAAAATGTTGATTCAAATGAGGGTATTCAACAAAGGAAATGTGATATTGGAATTAAGACAGAAATTATACAGCGTCCATTTGATTTCCCTGTTTGTAGAAATGATATCCATGGTTTTGGCAAAAATCAACAAACAATCAAAATTTATTCTAGGAAAAAACGTTTCCAATCTGTGACCAGAAAATGGCAACCACACTTTGGGAAATTCCATGGAACATGTTCCTGTTGTGGACGATTTTTCTGTGATAAATTGCTATTTTTAACCCATTTTTATATTTACCACTTTGTTGTTAATTGTAAAAAAACTGTTAATTTGAGAAAGAATAATTCTGCTACAACACAAATTAACCTACAAGATTTTGGTAATTTAAAGCAACAGATGAGGACTCACGGTGGACAAAAATCCTTTAAATGTGAAATTTGTTTAAAATGTTTTACACAATCCGAACATTTAAAAAGGCACATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGATCAAAATAACCTAAAACGTCATATTAAAATTCACACTGCTGAAAAACCTTTTATATGTGAAATTTGTTCGAAATGTTTTATACAATCCAATGATTTAAAAAGGCATAATAGAACTCACACTGACGAAAAACCTTTTAAATGTAAAAAATGTTCGAAATGTTTTAAAAATTCCGCTTCTTTAAAAAAGCATATTAGAAGTCACAGTAGTGAAAAACCTTTTAAATGTAACAATTGTTCAAAATGTTTCACAGAACAAAATAAACTAAAACGTCATATTAAAATTCACACTGCTGAGAAACCTTTTAAATGTGAAATTTGCTCAAAATGTTTTATACAATCCAGTGATTTAAAAAGACATATTAGAAGTCACAGTAGTGAAACACCTTTTAAATGTAACATTTGTTCAAAATGTTTCACAGCACAAAATAACCTTACACGTCATATTAAAATTCACACTGCTGAGAAACCTTTTAGTTGTGAAATTTGTTTAAAATGTTTTATACAATTCAATGATTTAAAAAGGCATAATAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAAGTTGTTCGAAATGTTTTAAAAATTCCGGTCCTTTAAAAAGGCATATTAGAACTCACACTGGGGAAAAACCTTTCAAATGTGAAATGTGTTCAAAATGTTTTATAGAATCCGGTCAGTTAAAAAGGCATATTAGAACTCATACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAACTGTTTCACACAAAAAAGCCACTTAAAGCAGCATATTAAAACTCATACTAACGAAAAACCTATTAAGTGTATTTAA
- Protein Sequence
- MDVFKDASNLLMNNKIESNSKDLLSNIKTEQIDIFEESKLEFENLDQFDLCKIKTESCVEKNSKTESDVVLISRENIKTENVDSNEGIQQRKCDIGIKTEIIQRPFDFPVCRNDIHGFGKNQQTIKIYSRKKRFQSVTRKWQPHFGKFHGTCSCCGRFFCDKLLFLTHFYIYHFVVNCKKTVNLRKNNSATTQINLQDFGNLKQQMRTHGGQKSFKCEICLKCFTQSEHLKRHIRTHTGEKPFKCKICSKCFTDQNNLKRHIKIHTAEKPFICEICSKCFIQSNDLKRHNRTHTDEKPFKCKKCSKCFKNSASLKKHIRSHSSEKPFKCNNCSKCFTEQNKLKRHIKIHTAEKPFKCEICSKCFIQSSDLKRHIRSHSSETPFKCNICSKCFTAQNNLTRHIKIHTAEKPFSCEICLKCFIQFNDLKRHNRTHTDEKPFKCKSCSKCFKNSGPLKRHIRTHTGEKPFKCEMCSKCFIESGQLKRHIRTHTGEKPFRCEICSNCFTQKSHLKQHIKTHTNEKPIKCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056928;
- 90% Identity
- iTF_00056928;
- 80% Identity
- iTF_00056928;