Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001009:23654-28571[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.9 3.1e+02 1.6 0.0 23 46 234 257 230 263 0.84

2 17 4.2 3.3e+02 1.5 0.0 21 44 260 283 257 287 0.87

3 17 0.037 2.9 8.1 0.2 20 44 287 311 283 315 0.89

4 17 0.22 17 5.6 0.2 22 44 317 339 311 343 0.86

5 17 0.47 37 4.5 0.2 22 45 345 368 340 373 0.87

6 17 5.5 4.4e+02 1.1 0.1 21 45 372 396 368 402 0.87

7 17 0.0035 0.28 11.3 0.1 21 46 400 425 396 429 0.90

8 17 1.5 1.2e+02 2.9 0.0 22 46 471 495 466 501 0.83

9 17 0.009 0.71 10.0 0.1 21 46 498 523 495 529 0.87

10 17 1.2 94 3.2 0.0 21 46 526 551 522 557 0.85

11 17 0.22 17 5.6 0.1 21 44 554 577 550 581 0.91

12 17 0.17 13 5.9 0.1 21 45 582 606 578 612 0.89

13 17 4.1 3.3e+02 1.5 0.1 22 44 611 633 606 637 0.86

14 17 0.016 1.3 9.2 0.1 21 45 638 662 634 665 0.90

15 17 0.33 26 5.0 0.0 21 52 666 697 662 698 0.88

16 17 0.56 45 4.3 0.0 21 44 694 717 692 724 0.89

17 17 0.61 49 4.2 0.1 25 45 726 746 719 748 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.9	3.1e+02	1.6	0.0	23	46	234	257	230	263	0.84
2	17	4.2	3.3e+02	1.5	0.0	21	44	260	283	257	287	0.87
3	17	0.037	2.9	8.1	0.2	20	44	287	311	283	315	0.89
4	17	0.22	17	5.6	0.2	22	44	317	339	311	343	0.86
5	17	0.47	37	4.5	0.2	22	45	345	368	340	373	0.87
6	17	5.5	4.4e+02	1.1	0.1	21	45	372	396	368	402	0.87
7	17	0.0035	0.28	11.3	0.1	21	46	400	425	396	429	0.90
8	17	1.5	1.2e+02	2.9	0.0	22	46	471	495	466	501	0.83
9	17	0.009	0.71	10.0	0.1	21	46	498	523	495	529	0.87
10	17	1.2	94	3.2	0.0	21	46	526	551	522	557	0.85
11	17	0.22	17	5.6	0.1	21	44	554	577	550	581	0.91
12	17	0.17	13	5.9	0.1	21	45	582	606	578	612	0.89
13	17	4.1	3.3e+02	1.5	0.1	22	44	611	633	606	637	0.86
14	17	0.016	1.3	9.2	0.1	21	45	638	662	634	665	0.90
15	17	0.33	26	5.0	0.0	21	52	666	697	662	698	0.88
16	17	0.56	45	4.3	0.0	21	44	694	717	692	724	0.89
17	17	0.61	49	4.2	0.1	25	45	726	746	719	748	0.87

Sequence Information

Coding Sequence: ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAGATGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAATCCGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGATAACTTGTATGAATTCGATCTTTCTACGATCAAAACGGAAAGTTGTGTAGAAAAAGAAGTTTCCTCAACTAAAACTGATGTGTTAATAAGCAGAGAAACTATAAAAACCGAAAATGTTGATTCAAATGACGGTATTCAAGAAAGAAAAAGTGATATAGAAATTAAGACAGACCTTACAAACCGTCCATTTGATTTCCCTATTAGTAGAAATGATATCCATAATTTTGATGAAAATCGACAGACAGTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTATGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTCTACTTAATTGTAAAAAATCTTTTAATTTGAGAACGAGTAATTATGCTACAAAACGTATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTTACAGTGGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCACACTGGTAAAAAACCTTTCAGATGTAAAATTTGTTCAAAATGTTTCACACGAAAAGGTAACTTAAAAGATCATATTAAAACTCACACAGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATCTTCTAGTAAATTCAAAGTTCATCTTAGGTCTCACATTAGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTTCTACACTCAGATAGTTTAAAAAGGCATATAAGAACTCACACTGGTGAAAAAACTTTCAGATGCGAAATTTGTTCGAAATGTTTCAGAGATTCCAGTAATTTAAATAGCCATATGAGAACTCACACTGGTGAAAAATCGTTTAGATGTCAAATTTGTTCAAAATGTTTCACACAATCCACTAGTTTAAAAAAACATATGAGAACTCACACTGGTGAACAAACTTTCAGATGTGAAATTTGTTCAAAATGTTTTACACAAAACGGACATTTACAAGATCATATTAAAACTCACAAAGGTGAAAAACCTTTCAGATGTGAAATTTGTACAAAATGTTTTAGAAGTTCCAGTAATTTAAAAACTCATATTAAAATTCACAATATGGAATCTGATAAGTTAAACAACCATATTAAAATTGACATTGGTGAAAACCGTTTCAGATGTGGAATTTGTTCGAAATATTTCACTAATTCCAGTAGTTTAAAAGCTCATATTAGAACTCACACTGGCGAGAAATCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGATTCCAGTAATTTAAATAGCCATATTAAAACTCACACTGGTGAAAAACCGTTTAGATGCCAAATTTGTTTAAAAAGTTTTATACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACTGGTGAGAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAGTAAACAGTAACTTAAAAGATCACATTAAAACTCACACAGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATCTTCTAGTAATTTAAAAGTTCATATTAGATCTCACATTAGCGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTTCTACACTCTGATAGTTTAAAAAAGCATATAAGAACTCACACTGGTGAAAAAACTTTCAGATGTGAAATTTGTTCGAAATGTTTCAGAGATTTCAGTAATTTAAATAGCCACATAAGAACTCACACTGGTGAAAAACCGTTTAGATGTCAAATTTGTTCAAAAAGTTTTATACAATCCAGTGATTTAAAAAGGCATATTAAAACTCACACTGGTGAGAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAGTTAAAGGTAACTTAAAAAATCATATTAGACTTCACAGTGGTGAAAAGCCATTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCGGTCACTTAAAAATACATACTAAAACTCATACTAACGAAAAACTTTTTAGATGTAAAGTTTGTTCAAAATGTTTCACACAAGAGGGTAACTTAAAACGACATATTAATAGTTGTGACGGTAAAACGTCCTAA
Protein Sequence: MDVFKDASNPLMNNKDESNSKDLLSNIKSEEIDIEECKLEFDNLYEFDLSTIKTESCVEKEVSSTKTDVLISRETIKTENVDSNDGIQERKSDIEIKTDLTNRPFDFPISRNDIHNFDENRQTVQTIKMYSWKKRFLSAAKKWHPQFGKYYGSCSFCGQFFCDKLLFLNHFYIYHILLNCKKSFNLRTSNYATKRINLKDFGNLKEQMRTYSGQNSFKRQKDLKQHIKIHTGKKPFRCKICSKCFTRKGNLKDHIKTHTGEKPFKCKICSKCFTSSSKFKVHLRSHISEKPYKCEICSKCFLHSDSLKRHIRTHTGEKTFRCEICSKCFRDSSNLNSHMRTHTGEKSFRCQICSKCFTQSTSLKKHMRTHTGEQTFRCEICSKCFTQNGHLQDHIKTHKGEKPFRCEICTKCFRSSSNLKTHIKIHNMESDKLNNHIKIDIGENRFRCGICSKYFTNSSSLKAHIRTHTGEKSFKCKICSKCFTDSSNLNSHIKTHTGEKPFRCQICLKSFIQSSDLKRHIRTHTGEKPFRCEICSKCFTVNSNLKDHIKTHTGEKPFKCKICSKCFTSSSNLKVHIRSHISEKPYKCEICSKCFLHSDSLKKHIRTHTGEKTFRCEICSKCFRDFSNLNSHIRTHTGEKPFRCQICSKSFIQSSDLKRHIKTHTGEKPFRCEICSKCFTVKGNLKNHIRLHSGEKPFKCKICSKCFTQSGHLKIHTKTHTNEKLFRCKVCSKCFTQEGNLKRHINSCDGKTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056793;
90% Identity: iTF_00056793;
80% Identity: iTF_00056793;