Avir007681.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000277:222968-229702[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0099 0.78 9.9 0.3 13 44 153 185 138 189 0.84 2 12 0.0077 0.61 10.2 0.1 20 52 189 221 185 222 0.87 3 12 0.68 54 4.0 0.1 21 44 218 241 216 245 0.89 4 12 0.013 1.1 9.5 0.0 20 44 245 269 238 274 0.86 5 12 0.82 65 3.8 0.1 21 47 274 300 270 305 0.85 6 12 0.4 31 4.8 0.1 21 46 302 327 298 334 0.86 7 12 9 7.1e+02 0.4 0.0 21 48 330 357 319 361 0.80 8 12 2.4 1.9e+02 2.3 0.1 17 44 354 381 346 385 0.84 9 12 0.0078 0.62 10.2 0.1 21 44 386 409 382 414 0.91 10 12 0.62 49 4.1 0.1 21 45 414 438 410 442 0.78 11 12 0.11 8.9 6.5 0.1 21 44 442 465 438 469 0.90 12 12 0.034 2.7 8.2 0.1 21 44 470 493 466 497 0.90
Sequence Information
- Coding Sequence
- ATGGAAAGTTGTGTAGAAAAAGTTTCTGAAACTAAAAGTGATGTGTTAATAAGTAGAGAAAATACAAAAACCATAAAAACCGAAAATGTTGATTCAAATGAGGGTATTCAAGAAAAAAAAAGTGATATCGAAATTAACACAGAAATTACAAAGCAATCATTTGATTTCCCTGTTTGTAGAAATGATATCCATGGTTTTGGTAAAAATCGACACACAGTACAAACAATCAGAATGTATTCTAGGAAAAAACGTTTCCAATCTTCGACCAGAAAATGGCAACCTCACTTTGAGAAATTCCATGGAACATGTTCCTGCTGTGGACGATTTTTCTGTGATAAATTACTATTTTTAAACCATTTTTATATTTACCACTTTGTTGTTAATTGTAAAAAAAGTGTTAATTTGAGAAGGAAAAATGCTACTACAAAACACATTAACCTACAAGATTTTGGTAATTTAAAGCAACAGATGAGGACTCACAGTGGACAAAAATCCTTTAACTGTGAAATTTGTTTAAAATGTTTTACACAATCCGAACATTTAAAAAGGCATATTAGAACTCACAGTAGTGAAAAATCTTTTAAATGTAACATTTGTTCAAAATGTTTCACAGAACAAAATAATCTAAAACGTCATATTAAAATGCACACTGCTGAGAAACCTTTTAAATGTGAAATTTGCTCAAAATGTTTTATACGATCCAATGATTTAAAAATGCATATTAGAAGTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTTTAAAAGTTTTACACAATCCGGTATTTTAAAGAAGCATATTGGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAATGGTCATTTACAAATGCATGTTAGAATTCATACTGACGAAAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCATACAATCCGGTCATTTAAAAACGCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAGTTTGTTCAAAATGTTTCACAGGAAATGATGGTTTAAAACAGCATATTAGTGGAACTCACACTGAAAAGTCATTTAAATGTAAAATTTGTTCAAAATGTTTTACAGGACAAACTAACTTAAAACAGCATATAAGAACCCACACTGGCGAGAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCAAACAATCCGGTCATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTTAAAATGTTTCATAGAACAAAGTGATTTAAAAAAACATATTAGAATTCATACTGACGAGAGCCCTTTTAAATGTGAATTTTGCTCAAAATGTTTTACGGCATCCAGTAATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTCCAAATGTGTAATTTGTTTAAAATGTTTTATAGAATCCGGTCAGTTAAAAAGGCATATGAGAACTCACACTGGTGAAAAAACCTTTCAGATGTGA
- Protein Sequence
- MESCVEKVSETKSDVLISRENTKTIKTENVDSNEGIQEKKSDIEINTEITKQSFDFPVCRNDIHGFGKNRHTVQTIRMYSRKKRFQSSTRKWQPHFEKFHGTCSCCGRFFCDKLLFLNHFYIYHFVVNCKKSVNLRRKNATTKHINLQDFGNLKQQMRTHSGQKSFNCEICLKCFTQSEHLKRHIRTHSSEKSFKCNICSKCFTEQNNLKRHIKMHTAEKPFKCEICSKCFIRSNDLKMHIRSHTGEKPFKCEICFKSFTQSGILKKHIGTHTGEKPFRCEICSKCFTQNGHLQMHVRIHTDEKPFKCKVCSKCFIQSGHLKTHIRTHTGEKPFRCEVCSKCFTGNDGLKQHISGTHTEKSFKCKICSKCFTGQTNLKQHIRTHTGEKPFKCKVCSKCFKQSGHLKRHIRTHTGEKPFKCEICLKCFIEQSDLKKHIRIHTDESPFKCEFCSKCFTASSNLKRHIRTHTGEKPSKCVICLKCFIESGQLKRHMRTHTGEKTFQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056883;
- 90% Identity
- iTF_00056883;
- 80% Identity
- iTF_00056883;