Avir011899.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000051:347824-350191[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.97 77 3.5 0.0 22 52 191 221 186 223 0.89 2 12 0.055 4.4 7.5 0.2 14 52 210 249 205 249 0.83 3 12 0.074 5.9 7.1 0.1 21 46 246 271 242 277 0.87 4 12 0.041 3.2 7.9 0.0 21 45 274 298 270 305 0.87 5 12 0.036 2.8 8.1 0.2 21 52 302 333 297 334 0.90 6 12 0.075 5.9 7.1 0.1 21 46 330 355 326 361 0.87 7 12 0.5 39 4.4 0.0 21 44 358 381 354 386 0.90 8 12 0.2 16 5.7 0.1 21 45 386 410 382 417 0.86 9 12 0.21 17 5.6 0.1 21 45 414 438 410 445 0.86 10 12 0.5 40 4.4 0.0 21 51 442 472 438 474 0.86 11 12 0.054 4.3 7.5 0.0 21 44 470 493 467 498 0.91 12 12 0.097 7.7 6.7 0.0 21 44 498 521 494 524 0.90
Sequence Information
- Coding Sequence
- ATGTTTAAAAAAGAACCAAAATTCGAATACGAAAGTTTTGAACAATTCGTAACAATGGATAATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCAAGAGATCAATTTTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGATGAAAATTTAAATTTAGAGCGAAGCATCAAAAGATATTCGAGGAAACAGGATCCAAATTATAAAAGAAGTTTCCTATCTGCGGCAACAAAATGGCAACCACACTTGGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAAAATTTCTATGATACATTGTTATTTTTAAACCATTTTTATATTTACCACTTTCTCGTTAATTCAAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCATAAAACATATTAACCGACATAATCTTAGTAATGTAAACATTGTAAACAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATGTATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCGAAATGTTTCACAGAATCCAATACCTTAAAAACTCACATTAGAACTCAGACTGGCGCAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAACATTCCAGTAGCTTAAAAACTCATATTAGAATTCACACTCACGAGAAACCTTTTAAATGTAAAATATGTTCAAAATGTTTCACACAATCCGGTCATTTAAAATCTCATATTAAAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAGGTTTCAAACATTCCAGTAACTTAAAAACTCATATTAGAACTCACGCTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAACATTCCAGTAGCTTAAAAACTCATATTAGAATTCACACTCACGAGAAACCTTTTAAATGTAAAATATGTTCAAAATGTTTCACACAATCCGGTCATTTAAAATCTCATATTAAAACTCACACTGGCGAAAAACCTTTCAAATGTAAAATTTGTTCGAAAGGTTTCAAACATTCCAGTGACTTAAAAACTCATATTAGAACTCACGCTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCACGCTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCATACAATCCGGTCCTTTAAAATCTCATATTAAAATTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAAGGTTTCAAACATTCCAGTAACTTAAAAAATCATATTAGAACTCACGCTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATTTTTCACACAATCCAGTCATTTAAAAACTCATATTAGAACTCACACTGACTAG
- Protein Sequence
- MFKKEPKFEYESFEQFVTMDNSSINSVTIKSENDISSQTNQEINFEFDIKKEELHSVCDLPDFKMEFPDFDENLNLERSIKRYSRKQDPNYKRSFLSAATKWQPHLGKFYGTCSSCGKNFYDTLLFLNHFYIYHFLVNSKKSVNLRRNNSGIKHINRHNLSNVNIVNKQIRADSFTQQSDLKKCIKTHNGEKRFKCKICSKCFTESNTLKTHIRTQTGAKPFKCKICSKCFKHSSSLKTHIRIHTHEKPFKCKICSKCFTQSGHLKSHIKTHTGEKPFKCKICSKGFKHSSNLKTHIRTHADEKPFKCKICSKCFKHSSSLKTHIRIHTHEKPFKCKICSKCFTQSGHLKSHIKTHTGEKPFKCKICSKGFKHSSDLKTHIRTHADEKPFKCKICSKCFKHSSTLKTHIRTHAGEKPFKCKICSKCFKHSSTLKTHIRTHTDEKPFKCKLCSKCFIQSGPLKSHIKIHTDEKPFKCKICSKGFKHSSNLKNHIRTHADEKPFKCKICSKFFTQSSHLKTHIRTHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056869;
- 90% Identity
- iTF_00056869;
- 80% Identity
- iTF_00056869;