Avir002983.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001401:102027-108277[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.021 1.7 8.8 0.1 26 49 107 129 98 135 0.82 2 9 0.0042 0.33 11.1 0.1 21 46 158 183 150 189 0.87 3 9 3.4 2.7e+02 1.8 0.0 21 44 186 209 182 213 0.85 4 9 0.35 27 4.9 0.1 21 44 214 237 203 239 0.80 5 9 0.011 0.91 9.7 0.0 14 44 234 265 229 270 0.82 6 9 0.023 1.8 8.7 0.1 21 45 270 294 265 301 0.86 7 9 0.015 1.2 9.3 0.1 21 45 298 322 294 329 0.87 8 9 1.5 1.2e+02 2.9 0.0 22 44 327 349 322 353 0.89 9 9 0.054 4.3 7.5 0.1 21 44 354 377 350 383 0.89
Sequence Information
- Coding Sequence
- ATGAGAAATTACGTTCAGAGCGACGCATCAGAACATATTCCAGGAAAACAGAATTCAGTTAGTAAAAAGTGTTTCGTATCTGCAGCAAAAAAATGCCAACCTCACTTTGGGAAATTTGATGGAACATGTTTCTCTTGTGGGAAATTTTTCTATGATAAATTGTTATTTTTAAAACATTTTTATATTTACCACTTTTTAGTTAATTCTAAAAAATCTATTAACTTAATAAGGAATAATTCTGTTACTAAACACATTAACCGACAAGATTTTGGTAATTTAAATGAACAGATGAGAGCTCACCGTGTACCAAAATCCTTTAAATGCGAAATTTGTTTTAAATGTTTCACCACATCTTATAATCTAGAAAGACATTTTCAAACTCACTTTGATGAAAATCCTGGTAGTAGTAAAATTTTTTCAATACGTTTTACAGAACAAAGTAACTTAAAACAGCATATTAAAACACACACTGAAGAGAAACCTTTTAACTGTAATATTTGTTCAAAATGTTTTAAAAAGTCCAGTCACTTAAAAAGGCACATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCTAAATGTTTTATAGAAACTGGTGCTTTAAAAAAGCATATTACAACTCACACTGGTGAAAAACCTTTCACATGTGATATTTGTTCGAAATGTTTCTCACGAAACGGTAGTTTAAAAACTCATATTAGATCTCACACTGACGAAAAACCTTTTACATGTAAATTTTGTTCAAAATCTTTTAAACAATCCGATAAGTTAAACACGCATATTAGAACTCACACTGATGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTATAAACAATCCGATACGTTAAAAACGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTAAAAAGTCTAGTCATTTAAACAGACACATTAAAACTCACATTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCGGTGATTTAAAAATGCATATTAGAACTCACACTGGTGAAAAACCTTTCATATGTGAAATTTGTTCGAAATGTTTCTCACAAAACGGTAATTTAAAAACTCATGTTAGAACTCATATTGACAAAAACCTTTTAAATCTAAAATTTGTTCAAAATGTTTTAAACAATACGATAAGTTACACGCATATTAGAACTCACACTGATGAAAAACCTTTTAAATTGTAG
- Protein Sequence
- MRNYVQSDASEHIPGKQNSVSKKCFVSAAKKCQPHFGKFDGTCFSCGKFFYDKLLFLKHFYIYHFLVNSKKSINLIRNNSVTKHINRQDFGNLNEQMRAHRVPKSFKCEICFKCFTTSYNLERHFQTHFDENPGSSKIFSIRFTEQSNLKQHIKTHTEEKPFNCNICSKCFKKSSHLKRHIKTHTGEKPFKCEICSKCFIETGALKKHITTHTGEKPFTCDICSKCFSRNGSLKTHIRSHTDEKPFTCKFCSKSFKQSDKLNTHIRTHTDEKPFKCKICSKCYKQSDTLKTHIRTHTGEKPFKCKICSKCFKKSSHLNRHIKTHIGEKPFKCEICSKCFIESGDLKMHIRTHTGEKPFICEICSKCFSQNGNLKTHVRTHIDKNLLNLKFVQNVLNNTISYTHIRTHTDEKPFKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056962;
- 90% Identity
- iTF_00056962;
- 80% Identity
- iTF_00056962;