Avir010635.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000423:337011-339036[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5 2e+02 2.2 0.2 22 49 88 115 78 118 0.81 2 11 0.00038 0.03 14.4 0.3 21 46 115 140 113 145 0.91 3 11 0.21 17 5.6 0.1 21 45 171 192 163 200 0.81 4 11 5.9 4.7e+02 1.0 0.1 21 44 196 219 192 223 0.76 5 11 0.014 1.1 9.4 0.0 21 45 224 248 216 251 0.90 6 11 0.14 11 6.2 0.0 21 52 252 283 248 284 0.85 7 11 0.14 11 6.2 0.1 23 44 282 303 279 307 0.90 8 11 0.0077 0.61 10.2 0.1 21 44 308 331 304 336 0.91 9 11 3.4 2.7e+02 1.8 0.1 21 44 336 359 332 363 0.87 10 11 0.0011 0.088 12.9 0.2 21 46 364 389 359 395 0.86 11 11 0.29 23 5.2 0.0 21 51 392 422 389 425 0.84
Sequence Information
- Coding Sequence
- ATGAGACATGTGCATTTTGTGGACAATTGTTTTTATCATAAATTATTATTTTTAAATCATTTTTATATATTTCACTTTTTAGTTAATACTAAAAAATCTTTTAATTTTAAGAGAAGTAAGCACGATTACCTAAAAAATCTTCAATACGAGAGTTGTTCTAAAATGTTTCAATGTAATCCGCGTTTAAAAAATCAGTTAAAATTACCTAAAAATTTCGCACGATCCAATACTGGAAAAAAGAATATTACAACTAAGATGGTTGAAAATTCTTTCAAATGTGAAATTTGTTTAAAATGTTTTTCAATGCAAAGTTACTTAAATCGACATCTTAGAATTCACACTGGTGAAAAACCTTACAAATGTCAAATTTGTTTCAAATGTTTCACACAATCAAATTCTTTAAAAAGACATATTAGAATTCATACTAATAAAATATTTTTTAAATGTGAAATTTGTTCAAAATGTTTTACAGAACAAAGTTATTTAAAAGAACATATTAGGACTCACACTAGGGAAAAACCTTTTAAGTGTATAATTTGTTTCACACAATCAAGTTCTTTAAGAACGCATATTAAAAGTCATACCGGTGAAAAACCTTTCGAGTGCGAAATTTGTTTAGAATCTTTTCCAGTACAAAGTAAGTTAAAACAGCATATTAGAATTCACACGGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAAGTTTTCACACAATCCAATTCTTTAACAGCGCATATTAAAACTCACACTGGTGAAAATCCTTTTAGATGTGAAATTTGTTTAAAAAGTTTCACAGAACAAAGTAACTTAAAAAAACATTATAGAGTTCACACTGGCGTAAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTCTCACAATCTAACTCTTTAAAAAAACATATTAGAACTCACACTGGAGAAAAACCTTTTCAATGTAAAATTTGTTCAAAATCTTTCTCACAATCCGATTCTTTAAAAAGACATATTAGAACTCACACTGGTGAAAATCCATTCAGATGTGAATTTTGTTCAAAATGTTTCACAATGCAAAGTAATTTAAAAAAACATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTCAAATTTGCTTAAAATGTTTCACCCAATCAAATTCTTTAAAAAGACATATTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTTAAAAAGTTACACATCACAAACTAACTTAAAAGAGCATATTAGAGTACACATTAACGAAAAAACCGGAATTAAGTTAGCGTGA
- Protein Sequence
- MRHVHFVDNCFYHKLLFLNHFYIFHFLVNTKKSFNFKRSKHDYLKNLQYESCSKMFQCNPRLKNQLKLPKNFARSNTGKKNITTKMVENSFKCEICLKCFSMQSYLNRHLRIHTGEKPYKCQICFKCFTQSNSLKRHIRIHTNKIFFKCEICSKCFTEQSYLKEHIRTHTREKPFKCIICFTQSSSLRTHIKSHTGEKPFECEICLESFPVQSKLKQHIRIHTGEKPFKCKICSKVFTQSNSLTAHIKTHTGENPFRCEICLKSFTEQSNLKKHYRVHTGVKPFECKICSKCFSQSNSLKKHIRTHTGEKPFQCKICSKSFSQSDSLKRHIRTHTGENPFRCEFCSKCFTMQSNLKKHIRTHTGEKPFKCQICLKCFTQSNSLKRHIKTHTGEKPFKCEICLKSYTSQTNLKEHIRVHINEKTGIKLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056857;
- 90% Identity
- iTF_00056857;
- 80% Identity
- iTF_00056857;