Avir006423.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000225:202112-218357[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00047 0.037 14.1 0.0 22 52 307 337 299 339 0.89 2 6 1.4 1.1e+02 3.0 0.0 22 48 335 361 331 365 0.85 3 6 0.034 2.7 8.2 0.0 21 46 362 387 359 389 0.92 4 6 0.00062 0.049 13.7 0.0 21 52 390 421 386 421 0.89 5 6 0.0019 0.15 12.2 0.0 21 52 418 449 416 451 0.93 6 6 2.8 2.2e+02 2.0 0.0 25 45 478 498 472 504 0.83
Sequence Information
- Coding Sequence
- ATGCAGGCTCATAAAATTAAGATAATGGACGTTTTCAACGAAAAAACTATTATTAAATCTGAGAAGCTTGAAATATTGCAGGAATCTGAATTTGAATTTGAGAATACAGATCAACTTAAAATTTGTAAAATCAAAACTGATATATCTCCAACTAAAAGTAAATTTGTATTAACGAACAGTATTAAAAATGAAAATGTTGATTCGAGTGAAAATGGCCAAGAAATGATTTGTGATTTCAAAATTAAAAAAGAATTTTTTGATCCGGAATGTGATCTGAGAGACTATAAAAATGAAATTGACGATTTTAATGAAAATCCTTGTTTTCAGCCAAGAATGGAAATTCAAAAATGTTATTTAATCCAAAAACAACGTTCTATGGATTTTAATGGAGGATATTACCAAACTTGTTGGCTCTGTGGACATTTTTTCCTTAACAAATTACTGTTTTTAACTCATTTTGTTATATACCACTTGTTAAAAAAATCGGCAAAAACTATTTTTTATAAAAAGAAAAAATCTGTACCAACTAATCTGCATAATTTCATTAAGTCAATGCAACTTCAGTACAAAATGAACTTGAAAAGACGTCAAAACAAGCGTTATATAAAAACTAGATTAAAACAAATAGAAGACAATTTATTAAAATCTTCAAAATTGTTGGAAGTTGAAGAATTTATAAATTCTAAAATTTGTCTGAAAAACTGCAGAAGCAGCTTCATTCTAAAAAATCATGCGATAGCAGAAAATGGCCACAAAAATTTTAAATGTGGAATGTACCCAAAAAGTGTCACACAAAACTGGAATTTGCAATCAAACAGGAATATTCACGTGGGTCAAAAATTATTTCAGTGTGAAATATGTACAAACAATTTTACAGAATTAAGTCGTTTAACAAGTCATATGAAAATTCATACTGGTCAAAAACCATTTAAATGTGTCATTTGTTCAGAGGGTTTCACACAAAGTTCTAATTTAAAAAGACATATGAATATTCACACTGGTCAAAAACCATTTGTATGTGAAATTTGTTCAAAAGGGTTTACACAAAACAGTACATTAAAAGCACATATGAATTTTCATACCGGTGAAAAACCATTTAAGTGTAAAATTTGTTCAAAGAGTTTTAAACAACGGGGTAATTTAAAATATCACATGAACATTCACACTGGGGAAAAACCATTTACATGTGAAATTTGTTTAAAGAGTTTCACTCAAAGCAGTACATTAAAAAATCATATAAAACTTCATACTGGTGAAAAGCCATTCAAGTGTACAATTTGTACTAAAAGTTTCACACAAAGTGGTCATTTAAAAACACATCTGAATATTCACACTCTTCAAAAACCATTCATTTGTAAAGTTTGTTCCAAGAGGTTCGCATTAAACGATAGTTTAAAAACACACATGAAAATTCACACTGGTGAAACTGCATTTAAGTGTGAGATTTGCAGAAAAAGTTTTATACGAAGCGGTCATCTAAAAAGGCACATGATTATTCATACTGGTCAAAAACAGTTGTAA
- Protein Sequence
- MQAHKIKIMDVFNEKTIIKSEKLEILQESEFEFENTDQLKICKIKTDISPTKSKFVLTNSIKNENVDSSENGQEMICDFKIKKEFFDPECDLRDYKNEIDDFNENPCFQPRMEIQKCYLIQKQRSMDFNGGYYQTCWLCGHFFLNKLLFLTHFVIYHLLKKSAKTIFYKKKKSVPTNLHNFIKSMQLQYKMNLKRRQNKRYIKTRLKQIEDNLLKSSKLLEVEEFINSKICLKNCRSSFILKNHAIAENGHKNFKCGMYPKSVTQNWNLQSNRNIHVGQKLFQCEICTNNFTELSRLTSHMKIHTGQKPFKCVICSEGFTQSSNLKRHMNIHTGQKPFVCEICSKGFTQNSTLKAHMNFHTGEKPFKCKICSKSFKQRGNLKYHMNIHTGEKPFTCEICLKSFTQSSTLKNHIKLHTGEKPFKCTICTKSFTQSGHLKTHLNIHTLQKPFICKVCSKRFALNDSLKTHMKIHTGETAFKCEICRKSFIRSGHLKRHMIIHTGQKQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057012;
- 90% Identity
- iTF_00057012;
- 80% Identity
- iTF_00057012;