Avir001339.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001148:294058-296731[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.2 3.3e+02 1.5 0.0 22 46 169 193 164 199 0.83 2 10 0.084 6.6 6.9 0.0 21 45 196 220 192 227 0.87 3 10 0.002 0.16 12.1 0.1 21 44 224 247 219 251 0.87 4 10 0.079 6.3 7.0 0.0 21 45 252 276 248 283 0.86 5 10 0.52 41 4.4 0.0 21 44 280 303 276 308 0.89 6 10 0.0024 0.19 11.9 0.1 21 46 308 333 303 339 0.86 7 10 0.0077 0.61 10.2 0.0 21 45 336 360 332 367 0.87 8 10 4.6 3.6e+02 1.4 0.1 21 44 364 387 360 393 0.81 9 10 0.3 23 5.2 0.0 21 44 393 416 389 423 0.89 10 10 0.32 25 5.0 0.1 25 45 425 445 417 447 0.87
Sequence Information
- Coding Sequence
- ATGGAAATTAAGACAGACATTACACACCGCCCATTTAATTTCTCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCGACAGACAGTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTGTGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTGTAAAAAATCTGTTAATTTGAGAACGAGTAATTATGCTACCAAACGTGTTAACCTAAAAGATTTTGGTAATTTACAAGAACAGATGAGGACTTACAGTGGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCACACTGGTGAAAAACTTTTCAGATGTAAAATTTGTTCAAAATGTTTCACACGAAATGGTGGCTTAAAAGATCATATTATTCGAATTCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAAAACGGACATTTAAAAGATCATATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATCTTCCAGTAATTTAAAAGTTCATATTAGATCTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTAACATCTTCCAGGAATTTAAAAGATCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGATTCCAGTAATTTAAATAGCCATATTAGAACTCACACTGGTGAAAAACCGTTTAGTTGTCAAATTTGTTCGAAATGTTTCACAGATTCCAGTAAGTTAAAAGGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAACCTAAAAACTCATATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAAAATTTTATACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACAGATGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCAAAGTAAAAGGTAGCTTAAAGAATCATATTATTCGAATTCACACTGGTGAAAAACCATTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCGGCCACTTAAAAATACATACTAAAACTCATACTAACGAAAAACTTTTTAGATGTAAAGTTTGTTCAAAATGTTTCACACAAGAGGGTAACTTAAAACGGCATATTAATAGTTATGACGGTAAAACGTCCTAA
- Protein Sequence
- MEIKTDITHRPFNFSVSRNDIHNFDENRQTVQTIKMYSWKKRFLSAAKKWHPQFGKYCGSCSFCGQFFCDKLLFLNHFYIYHILVNCKKSVNLRTSNYATKRVNLKDFGNLQEQMRTYSGQNSFKRQKDLKQHIKIHTGEKLFRCKICSKCFTRNGGLKDHIIRIHTGEKSFKCEICLKCFTQNGHLKDHIKTHTGEKPFKCKICSKCFTSSSNLKVHIRSHTGEKPFKCKICSKCLTSSRNLKDHIRTHTGEKPFKCKICSKCFTDSSNLNSHIRTHTGEKPFSCQICSKCFTDSSKLKGHIRTHTDEKPFKCKICSKCFTQSSNLKTHIKTHTGEKPFKCKICSKNFIQSSDLKRHIRTHTDEKPFKCEICSKCFKVKGSLKNHIIRIHTGEKPFKCKICSKCFTQSGHLKIHTKTHTNEKLFRCKVCSKCFTQEGNLKRHINSYDGKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057021;
- 90% Identity
- iTF_00056880;
- 80% Identity
- iTF_00056861;