Avir012959.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000582:319129-339120[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.033 2.6 8.2 0.1 26 53 264 290 251 291 0.85 2 8 0.0072 0.57 10.3 0.2 20 47 314 341 296 346 0.80 3 8 0.019 1.5 9.0 0.0 21 44 343 366 339 370 0.92 4 8 0.01 0.79 9.9 0.2 21 44 371 394 367 398 0.88 5 8 0.034 2.7 8.2 0.0 21 44 399 422 394 426 0.87 6 8 0.1 8.2 6.6 0.1 21 44 427 450 423 454 0.90 7 8 0.027 2.2 8.5 0.3 21 44 455 478 451 483 0.90 8 8 0.087 6.9 6.9 0.0 21 45 483 507 479 513 0.90
Sequence Information
- Coding Sequence
- ATGGATTTTTCCGTAATAAACCACAAAGAAATGGAAATTGTTGACGAACCTAAACCCGAACTGCGTTTCGATCAGATTGAAATAAGTAAGCTACTAGCTACAAAAACCGGCGAAAACAATATTTCGGTAATAAAACAGAAAGAACTGGAAATTGTTAACAAGCCAAAACCTGAACTGCATGGTTTCGATCAGATTGAAATAATTCAAAAACAGCCCTACAAGAGTAGTGTGTTTAAAAAAGAACCGAAATTTGAATATGAAAACTCGCAACAATTCGTAACACTGGATAATTCTACAGTAAATTCTTTCACCACAAAAATTGAAATGTTAAGTAGTAGTGAAAATGATAAAAGTGAAATAAATATTTCAAGTCAAACTAATCATGAGATGAATCTTGAATTTGATATTAAAAATGAAGAATTGCACTCTATTTGCGAATTACCTGATTTTAAAATGAAATTTCAAGATTTTGATAAAGAATTACGTTCAGAGCAACGCTTCAAAAGGTATTCCAGGAAACAGGATCCAGTTAGTATAGAGCGTTTCGTATCTGCAACAAAAAAATGGCAACCTCACTTTGGGAAATCCTATGGAACATGTTCTTCTTGTGGAAAATTTTTCTACGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCCAAAAAATCGTTTAACTTTGGAAGGAATAACTCTGCTACAAAACAAAATAACCGAGGAGATCTTGGTAATTTAAACAAACAGATGAGGTCTTACATTGGACAAAAATACTTTAAATGTGAAATTTGTTTTAAATGTTACACCACATCTTATAATCTAAAAATTCATCTTCAAACTCACTTTGGTAAAAATTGTGTTAGTTGTACAATTTGTTCAAAACGTTTCAAGCGACAAAGTGATCTAAAAACACATACTAGAACACACACTGGCGAAAAACCTTTCAAATGTAAAATTTGTTCTAAATGTTTCACACAGTCTGTTAATTTAAAAATTCATACTAGAATTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTATGGGATCCGGTAATTTAAAAAGGCATATTAGAAGTCACACTGGTGAAAAACCCTATAAATGTAAAATTTGTTCAAAATGTTTTATACATTCCGGTAATTTAAAAAGACATATAAGAAGTCACACTGATGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTATAGAATCCGGTAATTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTCGAAATGTTTCACACAATCTTATAGTTTAAAATCTCACATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAAAATCGTGTAATTTAATAAGACATGTTAGAACTCATACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTCATCTAAAAACTCATATTAAAACTCACACTGACGAAAAACGTTTTAAATGTAAAATTTGA
- Protein Sequence
- MDFSVINHKEMEIVDEPKPELRFDQIEISKLLATKTGENNISVIKQKELEIVNKPKPELHGFDQIEIIQKQPYKSSVFKKEPKFEYENSQQFVTLDNSTVNSFTTKIEMLSSSENDKSEINISSQTNHEMNLEFDIKNEELHSICELPDFKMKFQDFDKELRSEQRFKRYSRKQDPVSIERFVSATKKWQPHFGKSYGTCSSCGKFFYDKLLFLNHFYIYHFLVNSKKSFNFGRNNSATKQNNRGDLGNLNKQMRSYIGQKYFKCEICFKCYTTSYNLKIHLQTHFGKNCVSCTICSKRFKRQSDLKTHTRTHTGEKPFKCKICSKCFTQSVNLKIHTRIHTGEKPFKCKICSKCFMGSGNLKRHIRSHTGEKPYKCKICSKCFIHSGNLKRHIRSHTDEKPFKCKICSKCFIESGNLKKHIRTHTGEKPFKCEICSKCFTQSYSLKSHIRTHTDEKPFKCKICSKCFTKSCNLIRHVRTHTGEKPFKCKICSKCFTQSGHLKTHIKTHTDEKRFKCKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056957;
- 90% Identity
- iTF_00056957;
- 80% Identity
- iTF_00056957;