Avir006907.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00002429:33703-41192[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.83 66 3.7 0.1 24 45 60 81 47 84 0.83 2 9 0.015 1.2 9.3 0.0 21 49 85 113 81 117 0.86 3 9 0.037 3 8.0 0.0 20 44 140 164 130 168 0.86 4 9 0.23 18 5.5 0.1 21 44 169 192 165 196 0.90 5 9 0.05 4 7.6 0.0 21 46 197 222 193 228 0.86 6 9 0.014 1.1 9.4 0.0 21 51 225 255 221 258 0.86 7 9 0.017 1.4 9.1 0.0 21 45 281 305 269 311 0.86 8 9 0.7 55 4.0 0.3 21 47 337 363 329 369 0.84 9 9 0.034 2.7 8.2 0.0 21 45 393 417 385 423 0.88
Sequence Information
- Coding Sequence
- ATGGAAAAAATTGAAGAACATGAGGTGAATGTTGAATTTGAAATTAAAAAAGAAGAATTACACTCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAGTTATAAAAATATTGACGATAAATCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAAAATCCTGTAATTTAAAAGATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAAAACTCACACAAACGAGAAACCTTTTAAATGTGAAAATTGTTCGAAATGTTTCACACTTTTTGATACTTTAAAAAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATCAGGTAATTTAAAATATCATATTAAAAGTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTACACACAATCCGGTCATTTAAAAAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATTGAGTAATTTAAAAGATCATATTAAAACTCATACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAAAACTCACACAAACGAGAAACCTTTTAAATGTGAAAATTGTTCAAAATCTTTCAAACTTTTTGATACTTTAAAAAGGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATCCGGTAATTTAAAAAATCATATGAAAACTCACACTAACGAGAAACTTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAACATCCACTTATTTAAAATGTCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTCGAAACGTTTCGCACAATCCGGTAGTTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACATATTCTGATAGTCTAAAAATTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAATATGTTCAAAAGATTTTACACATTCCAGTAATTTAAAAAAACACATTAGAACTCACATTAATAAAAAACGCTAA
- Protein Sequence
- MEKIEEHEVNVEFEIKKEELHSTIDLPDFKIEFQDSDEELNSERDSTKQEPSYKNIDDKSFKCKICSKCFTKSCNLKDHIKTHTGEKPFKCKLCSKCFTQSGNLKSHIKTHTNEKPFKCENCSKCFTLFDTLKKHIRTHTNEKPFKCKLCSKSFTQSGNLKYHIKSHTGEKPFKCKLCSKCYTQSGHLKKHIRTHTNEKPFKCKICSKCFTQLSNLKDHIKTHTGEKPFKCKLCSKCFTQSGNLKSHIKTHTNEKPFKCENCSKSFKLFDTLKRHIRTHTNEKPFKCKLCSKSFTQSGNLKNHMKTHTNEKLFKCKICSKCFTTSTYLKCHIRTHTNEKPFKCKLCSKRFAQSGSLKCHIRTHTNEKPFKCKFCSKCFTYSDSLKIHIRTHTNEKPFKCEICSKDFTHSSNLKKHIRTHINKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056852;
- 90% Identity
- iTF_00056852;
- 80% Identity
- iTF_00056852;