Avir011110.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000450:442137-446496[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 8.2 6.6 0.1 18 48 128 158 121 164 0.75 2 10 0.95 75 3.5 0.1 26 44 165 183 160 187 0.89 3 10 0.18 14 5.9 0.1 21 44 188 211 184 215 0.90 4 10 0.11 8.8 6.5 0.0 21 44 216 239 212 244 0.91 5 10 0.0017 0.14 12.3 0.1 21 48 244 271 240 275 0.86 6 10 0.024 1.9 8.7 0.0 21 44 272 295 268 299 0.91 7 10 0.2 16 5.7 0.1 21 47 300 326 296 331 0.83 8 10 0.23 18 5.5 0.1 21 44 328 351 324 356 0.88 9 10 0.066 5.3 7.2 0.2 21 44 356 379 352 383 0.90 10 10 0.0033 0.26 11.4 0.5 21 46 384 409 380 414 0.88
Sequence Information
- Coding Sequence
- ATGTTGATTCAAATGAAGGTATGCAAGAAAGAAAAAGTTACATCGATGTTAAAACAGGAATTATGCAACGTACCTACATTGGATTTCCCTATTTCTAGAAATGATATCCATAATTTTGGTAAAACAGCGCAAAAAATCAAAATGAATTTTAGGAAAAAATGTTTCCTATCTGCGACAAAAAAGTGGCAACCTCACTTTGGAAGATTATATGGAACATGTTCCTCTTGTGGACGATTTTTCTATGAAAAATTGTTATTTTTAAATCATTTTTATATTTATCACTTTTTAGTTGATTCCAAAAAATCTATTAACTTAAAAAAGAACGATTCTGTTACAAAACACATTAAACTAGAAGATCTTGGTAATTTAAACGAACAGAAGCGAACTCATAGTGGACAAGAATCCTTTAAATGCAAAATTTGTTTTAAATGTTACACCACATCTTATAATTTAAAAATACATTTTCAAACCCACTTTGGTGGAGATTCTGTAAGTTGTAAAATTTGTTTAAAACATTTCACACAACAAAGTAGTTTAAAAAGACATATTAGAACCCACACTGGGGAAAAACCGTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATTTAGCAATTTAAAAATTCATATTATAACTCACACTGACGAAAAGCCTTTTAAATGTAAAATTTGTTTAAAATGTTACAAAGGATCCAGTGATCTTAAAAAACATATTAGAACCCACACTGGAGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAAAAAAGAAACTTAAAACTGCATATTAGAATTCACACTGATGAGAAACCTTTTAAATGTAAGATATGTTCAAAATGCTTCACACAATCCGGTGATTTAAAAAAGCATATTAGATCTCACACTGGTGAAAAACCTTTCAGATGTGAAGTTTGTTCAAAATGTTTCGCATATTCCGGTAATTTAAAAACTCACATTAGAACTCACACTAACGAAAAACCTTTCAAATGTGAAATTTGTTCGAAATGTTTCACACAATCCGATCATTTAAACCTTCATATTAGAACTCACACTGGCGAAAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTCAGAGGACAAAGTCATTTAAAAAGACATATTAGAACACACACTGGTGAACAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACTCAACAAAGTAGTTTAAAACGGCATATTATTAGAACTCACACTGACAATTATCCTGTTTAA
- Protein Sequence
- MLIQMKVCKKEKVTSMLKQELCNVPTLDFPISRNDIHNFGKTAQKIKMNFRKKCFLSATKKWQPHFGRLYGTCSSCGRFFYEKLLFLNHFYIYHFLVDSKKSINLKKNDSVTKHIKLEDLGNLNEQKRTHSGQESFKCKICFKCYTTSYNLKIHFQTHFGGDSVSCKICLKHFTQQSSLKRHIRTHTGEKPFKCKICSKCFTQFSNLKIHIITHTDEKPFKCKICLKCYKGSSDLKKHIRTHTGEKPFKCKICSKCFTQKRNLKLHIRIHTDEKPFKCKICSKCFTQSGDLKKHIRSHTGEKPFRCEVCSKCFAYSGNLKTHIRTHTNEKPFKCEICSKCFTQSDHLNLHIRTHTGEKPFECKICSKCFRGQSHLKRHIRTHTGEQPFKCKICLKCFTQQSSLKRHIIRTHTDNYPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056922;
- 90% Identity
- iTF_00056922;
- 80% Identity
- iTF_00056922;