Avir017059.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000920:20217-24837[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.27 21 5.3 0.1 21 46 197 222 186 225 0.88 2 10 0.0039 0.31 11.2 0.1 21 45 225 249 222 251 0.92 3 10 0.11 8.6 6.6 0.1 21 46 253 278 249 281 0.90 4 10 0.0059 0.47 10.6 0.1 21 44 281 304 277 308 0.90 5 10 0.057 4.5 7.5 0.1 21 46 309 334 305 339 0.90 6 10 1.2 97 3.2 0.1 26 46 342 362 335 367 0.86 7 10 0.016 1.3 9.2 0.1 21 45 365 389 363 396 0.89 8 10 0.015 1.2 9.3 0.2 21 44 421 444 416 448 0.90 9 10 0.014 1.1 9.4 0.1 21 45 449 473 445 479 0.89 10 10 0.036 2.8 8.1 0.1 21 44 477 500 473 503 0.88
Sequence Information
- Coding Sequence
- ATGGATGATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGACATTTCTAGTCAAACTAAGCAAGAGATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGATGAAGAATTAAAATTAGGGCGAAGCATCAAAAGATATTCGAGGAAACAGAATCCAAATTATAAAAAACGTTTTCTATCTGCGGCAACAAAATGCCAACCTCACTTTGGAAAATTCTATGGAACATGTTCGTCTTGTGGAAAATTTTTCTGTGATAAATTGTTATTTTTAAACCATTATTATATTTACCACTTTTTCGTTTATTCGAAAAAATCTGTTAACTTAAAAAGGAATAATTCTGGCACAAAGCATATTAACCGTCAAGATCTTAGTAATGTAAACAAACAGAAAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACACAAACGGGCAAAAAACGTTATAAATGTAAAATTTGTTCGAAAGGTTTCACACGATCCAGTGACTTAAAAAATCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAAAGTTCCAGTTACTTAAAAACTCATATTAGAATTCACACTAATGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCACACAATCCAGTAACTTAAAATCTCATATTAAAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAAATTCCAGTAACTTAAAAGTACATATTAGAATTCACTCTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCCAGTAACTTAAAATCTCATATTACAACTCACACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCTGTTCATTTAAAATCTCATATTAAAATTCATACTGACGAGAAACTTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCTGTTCATTTAAAATCTCATATTAAAATTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAGTTTAAATAGACATATTAGAACTCACACTGCGGAAAAATCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCAGTTGTTTAAATAGACATATTCGAACTCACACTGGCGAAAAACCTTCTAAATGTAAAATATGTTCGAAATGTTTCAGAGATTCCAGTCATTTAAAAAATCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAGTTTAAATAGACATATTAGAACTCACACTGCCGAAAAATCTTTTAAATGTAAAATATGTTCGAAATGTTTCAGAGATTCCAGTAATTTAAAAAATCATATAAGAACTCACACTGACTAG
- Protein Sequence
- MDDSSINSVTIKSENDISSQTKQEINIEFDIKKEELHSVCDLPDFKMEFPDFDEELKLGRSIKRYSRKQNPNYKKRFLSAATKCQPHFGKFYGTCSSCGKFFCDKLLFLNHYYIYHFFVYSKKSVNLKRNNSGTKHINRQDLSNVNKQKRADSFTQQSDLKKYIKTQTGKKRYKCKICSKGFTRSSDLKNHIRTHTGEKPFKCKICSKCFKSSSYLKTHIRIHTNEKPFKCKICLKCFTQSSNLKSHIKTHTGEKPFKCKICSKCFINSSNLKVHIRIHSDEKPFKCKICSKCFTQSSNLKSHITTHTGEKPFKCKICSKCFTQSVHLKSHIKIHTDEKLFKCKICSKCFTQSVHLKSHIKIHTDEKPFKCKICSKCFTQSGSLNRHIRTHTAEKSFKCKLCSKCFTESSCLNRHIRTHTGEKPSKCKICSKCFRDSSHLKNHIRTHTDEKPFKCKICSKCFTQSGSLNRHIRTHTAEKSFKCKICSKCFRDSSNLKNHIRTHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056833;
- 90% Identity
- iTF_00056833;
- 80% Identity
- iTF_00056833;