Avir014914.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000726:163274-165028[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.036 2.8 8.1 0.0 17 44 40 67 33 71 0.85 2 13 0.37 30 4.8 0.0 21 46 72 97 68 105 0.85 3 13 4 3.2e+02 1.5 0.2 21 46 100 125 96 130 0.88 4 13 0.056 4.4 7.5 0.4 22 44 129 151 120 156 0.87 5 13 0.0023 0.18 11.9 0.0 21 51 156 186 152 188 0.87 6 13 1.4 1.1e+02 3.0 0.0 21 45 184 208 180 215 0.84 7 13 2.6 2e+02 2.2 0.0 21 44 212 235 200 239 0.82 8 13 0.0094 0.74 10.0 0.1 21 45 240 264 236 271 0.86 9 13 0.9 71 3.6 0.0 21 45 268 292 263 299 0.82 10 13 1.3 1e+02 3.1 0.0 21 44 296 319 284 323 0.82 11 13 0.023 1.8 8.7 0.1 21 46 324 349 311 355 0.82 12 13 2.8 2.2e+02 2.1 0.2 21 43 352 374 348 378 0.86 13 13 0.0025 0.2 11.8 0.1 11 44 369 403 362 404 0.88
Sequence Information
- Coding Sequence
- ATGAGAAATTTGAAAAACGTTAGAATGATTTTTCGAAAAATCAGTATATTTCAGTCATTTTTTTTGAATTTTTGCGAAATTTCAAAGTGTTTAATTTCCACAAAACAGGAACCGAGTTATAAAAATTTTGGCGATAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCACAAAATCCAGTAATTTAAAAAGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTTACAGAATCCGATCATTTAAAAACTCATATTAGAACTCACACTGGAGAAAAACCTTATAAATGTAAGTTTTGTTCGAAATGTTTCACAAATCCCAGTAACTTAAAATGTCATATTAGAATTCACACTAACGAAAAATCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCAATAATTTAAAAGATCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAATTCATATTAAAATTCACAGTGACGAGAAACCTTTTAAATGTGAAATTTGTTCGAAAAGTTTCATAAAATCCGGTCATTTAAAAGATCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTGAAATATGTTCGAAAGGTTTCACACATTCTGGTAGTCTAAAAATTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACAGAATCCAGTAATTTAAAAAAGCACATTAGAACTCACAGTGACGAGAAACCTTTTAAATGTGAAATATGTTCAAAAGGTTTCACAGAGTCTGGTAGTTTAAAAACTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTGAAATATGTTCAAAAGGTTTCACAGAGTCTGGTAGTTTAAAAACTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTTACAGAATCCAGTTATTTAAAACGTCATATTAGAACACACACTGGAGAAAAGCCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACAACATCTGGTAGTTTAAAAACTCATAGTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACACAATCAGGTAGTTTAAAAAGGCATCTATTAGATTAA
- Protein Sequence
- MRNLKNVRMIFRKISIFQSFFLNFCEISKCLISTKQEPSYKNFGDKPFKCKICLKCFTKSSNLKSHIRTHTGEKPFKCKICSKCFTESDHLKTHIRTHTGEKPYKCKFCSKCFTNPSNLKCHIRIHTNEKSFKCKICSKCFTQSNNLKDHIRTHTNEKPFKCKICSKCFTQSGNLKIHIKIHSDEKPFKCEICSKSFIKSGHLKDHIRTHTGEKPFKCEICSKGFTHSGSLKIHIRTHTNEKPFKCEICSKCFTESSNLKKHIRTHSDEKPFKCEICSKGFTESGSLKTHIRTHTGEKPFKCEICSKGFTESGSLKTHIRTHTGEKPFKCKICSKCFTESSYLKRHIRTHTGEKPFKCKICSKCFTTSGSLKTHSRTHTNEKPFKCKFCSKCFTQSGSLKRHLLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056820;
- 90% Identity
- iTF_00056820;
- 80% Identity
- iTF_00056820;