Avir017536.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000975:71254-73364[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0029 0.23 11.6 0.2 20 45 43 68 38 75 0.85 2 12 0.22 17 5.6 0.1 21 44 72 95 68 99 0.89 3 12 0.007 0.56 10.4 0.0 7 50 86 129 82 132 0.74 4 12 0.027 2.1 8.5 0.1 21 46 128 153 124 159 0.87 5 12 2.4 1.9e+02 2.3 0.0 21 46 156 181 152 188 0.84 6 12 0.22 17 5.6 0.3 23 44 186 207 176 211 0.88 7 12 0.41 33 4.7 0.0 21 51 212 242 208 244 0.85 8 12 4.9 3.9e+02 1.2 0.1 21 44 240 263 236 267 0.88 9 12 0.11 8.5 6.6 0.1 21 44 268 291 260 294 0.88 10 12 0.0085 0.67 10.1 0.0 21 44 296 319 292 324 0.90 11 12 0.0028 0.22 11.6 0.1 21 45 324 348 320 355 0.86 12 12 0.23 18 5.5 0.0 21 49 352 380 348 384 0.85
Sequence Information
- Coding Sequence
- ATGGAGAAGATTCCATGTACGATCTGGAGAAAAGGAGATATCGTCGCTTGGTTAAAATCCAAAAATATTTCGTGCGACGATACCATGTTGAAAATAGAACTTTTGGCTATTGTAAGAGAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTGCGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACAGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACTATCCCGTAATTTAAAAAGTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTTGAAATGTTTCACACACTCCGGTTATTTAAAAACTCATATTAGAACTCACACTGGCGGGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAAAATCCTGTAACTTAAAAACTCATATTAGAACTCATACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACATATTCCAGTGGATTAAAAAGTCATATTAGAATCCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTATTTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCCTATAAATGTGAAATATGTTCGAAATATTTCTTAAATTCCAGTAACTTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGGTTCACACAATCCAGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAGTTATGTTCAAAATGTTTCACACAATCCGGTAGTTTAAAAGTTCATATTAAAACTCACACTAACGAAAAACCTTTTAAATGTTAA
- Protein Sequence
- MEKIPCTIWRKGDIVAWLKSKNISCDDTMLKIELLAIVRETHTGEKPFKCKICSKCFTQSCNLKSHIRTHTDEKPFKCKICAKCFKHSSTLKTHIRTHTDEKPFKCKICSKFFTQSGSLKSHIRIHTDEKPFKCKLCSKCFTLSRNLKSHIRTHTGEKPFKCKLCLKCFTHSGYLKTHIRTHTGGKPFKCKICSKCFTKSCNLKTHIRTHTGEKPFKCKICSKCFTYSSGLKSHIRIHTGEKPFKCKLCSKCFTKSSILKTHIRTHTDEKPYKCEICSKYFLNSSNLKSHIRTHTDEKPFKCKICSKWFTQSSNLKSHIRTHTDEKPFKCEICSKCFTQSSNLKTHIRTHTDEKPFKCKLCSKCFTQSGSLKVHIKTHTNEKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056873;
- 90% Identity
- iTF_00056873;
- 80% Identity
- iTF_00056873;