Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000450:520959-537681[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.024 1.9 8.6 0.0 26 49 171 193 159 198 0.82

2 17 4.2 3.3e+02 1.5 0.0 21 51 221 251 215 252 0.85

3 17 0.0098 0.77 9.9 0.4 21 44 249 272 245 276 0.92

4 17 0.066 5.3 7.2 0.1 21 44 277 300 272 304 0.87

5 17 0.12 9.7 6.4 0.1 21 52 305 336 301 337 0.87

6 17 0.59 46 4.2 0.2 22 45 334 357 329 364 0.87

7 17 7.5 6e+02 0.7 0.3 26 44 366 384 360 388 0.89

8 17 0.046 3.6 7.8 0.1 21 45 389 413 386 420 0.85

9 17 1.5 1.2e+02 2.9 0.1 22 45 418 441 414 444 0.88

10 17 0.00045 0.035 14.2 0.2 21 44 445 468 442 472 0.92

11 17 0.1 8.2 6.6 0.1 21 44 473 496 468 501 0.87

12 17 0.0017 0.13 12.4 0.0 21 45 501 525 497 532 0.87

13 17 2.1 1.6e+02 2.5 0.1 21 44 529 552 525 556 0.89

14 17 0.48 38 4.5 0.0 23 46 559 582 553 587 0.87

15 17 0.14 11 6.2 0.3 22 46 586 610 583 616 0.83

16 17 0.2 16 5.7 0.1 21 46 613 638 609 644 0.86

17 17 1.8 1.4e+02 2.7 0.3 21 47 641 667 637 673 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.024	1.9	8.6	0.0	26	49	171	193	159	198	0.82
2	17	4.2	3.3e+02	1.5	0.0	21	51	221	251	215	252	0.85
3	17	0.0098	0.77	9.9	0.4	21	44	249	272	245	276	0.92
4	17	0.066	5.3	7.2	0.1	21	44	277	300	272	304	0.87
5	17	0.12	9.7	6.4	0.1	21	52	305	336	301	337	0.87
6	17	0.59	46	4.2	0.2	22	45	334	357	329	364	0.87
7	17	7.5	6e+02	0.7	0.3	26	44	366	384	360	388	0.89
8	17	0.046	3.6	7.8	0.1	21	45	389	413	386	420	0.85
9	17	1.5	1.2e+02	2.9	0.1	22	45	418	441	414	444	0.88
10	17	0.00045	0.035	14.2	0.2	21	44	445	468	442	472	0.92
11	17	0.1	8.2	6.6	0.1	21	44	473	496	468	501	0.87
12	17	0.0017	0.13	12.4	0.0	21	45	501	525	497	532	0.87
13	17	2.1	1.6e+02	2.5	0.1	21	44	529	552	525	556	0.89
14	17	0.48	38	4.5	0.0	23	46	559	582	553	587	0.87
15	17	0.14	11	6.2	0.3	22	46	586	610	583	616	0.83
16	17	0.2	16	5.7	0.1	21	46	613	638	609	644	0.86
17	17	1.8	1.4e+02	2.7	0.3	21	47	641	667	637	673	0.85

Sequence Information

Coding Sequence: ATGGATAATTCTTCAATAAACGCTTTCATTACTAAAAGTGAAATGATAATTAGCAATGAATATGATAAAACTGGAGTAGATATTCAAAACCAATCTAATCAAGAGATGAATCTTGAATTCGACATTAAAAAAGAAGAATTGCATTCTATTTGCGATTCTCCGGATATTAAAATGGAATTTCAAGATTTTGATGAAGAATTACGTTCAGAGCGAGGCATCAAAACATATTCCAGGAAACAGGATCCAGTTAGTATTAAAGAGCGTTTCCTATCTGCAGCAAAAAAATGCCAACCTCACTTTGGGAAATTTTATGGAACATGTTCCTCTTGTGGAAAATTCTTCTATGATAAATTGCTATTTTTAAACCATTTCTATATTTATCACTTTTTAGTTAATTCTAAAAAATCTGTTAACATGAGAAGGGATAATTCTTCTACAACACAAGTTAACCTAGAAAATTTTGGTAATTTAAGCGAACAGTTGAGGACTGACAATGGACAAAAATCCTTTAAATGCGAAATTTGTTTTAAATGTTACACCACATCTTATAATCTTAAAAGACATTTTAAAACTCACTTTGAGGAAAATTCTGTTGATAAAATTTGTTCAAAACCTTTTACAGAACAAAGTTACTTAAAACAGAATATTAAAACTAACACTGAAGAGAAACCTTTTAAATGTAAACTTTGTTCGAAATCTTACACACAAAAAGTTCATTTAAAAACTCATATTAGAATTCACACTAACGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAATCGAGTCATTTAAAAAGGCATATTAGAAGTCACACTGGTGAAAAACCTTTCATATGTGAAATTTGTTCCAAATGTTTCACACAATCTTCTAGTTTAAAAACTCATATTAGAACTCACACTGACGAAAAACCTTTTAAATGTGAAATTTGTCCAAAATCTTACACACAAAATGTTAATTTAAAAAGTCATATAAGAACTCACACTGTCAAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAAAATCCGGTACTTTAAAAAGGCATATTAGAACTCACCCTGTCAAAAAAACTTTTAAATGTAGAATTTGTTCTAAATGTTTTACACATTCTATTAATTTAAAAACTCATATTATAACTCACACTGACGAGAAACCGTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGAACAAAGCAACTTAAAACGGCATATTATAACTCACACTAACCAGAAACCTTTTAAATGTAAGGTTTGTTCGAAATGTTTCACACAATCTGATAGTTTAAAAATTCATATTCGAATTCACACTGGCGAAAAACCTTTTAAGTGTAAAATTTGTTCAAAATGTTTTAGACAATCCCAAAATCTAAAAATGCATATTAGAAGTCACACTGGTGAAAAACCTTTCATATGTGAAATTTGTTCGAAATGTTTCACACAATACGGTAATTTAAAAACTCATATTCGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTGGAAATCTTTCACACAATCTGCTAGTTTAAAGAGACATATTACAACTCACACTGACGAAAAACCTTTTAAATGTAGAATTTGTTCAAAATGCTTCACACATTCTGGTAGTTTAAAAACTCATATAACAACTCACTCTGACTCAAATCCTTTTAAATGTAAAATTTGTTCAAAATCTTTCACAAAATCTGTTAATTTAAAAATTCATATTAAAATTCACACCGGCGAAAAAACTTTTAGATGTAAAATTTGTTCAAAATGTTTTATACAATCCAGTAAGCTAAAAAGGCACATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCGAAATGTTTCACACAATCCGATCATTTAAACACTCATATTAAAACTCACACTGACGAGAAACCTTTTAAATGTAAAATGTGTTCAAAGTGTTTCACACAAAAATGTCATTTAAAACAACATATTAAAACTCACACTAACTTAAAGCCTTTTAAATGA
Protein Sequence: MDNSSINAFITKSEMIISNEYDKTGVDIQNQSNQEMNLEFDIKKEELHSICDSPDIKMEFQDFDEELRSERGIKTYSRKQDPVSIKERFLSAAKKCQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFLVNSKKSVNMRRDNSSTTQVNLENFGNLSEQLRTDNGQKSFKCEICFKCYTTSYNLKRHFKTHFEENSVDKICSKPFTEQSYLKQNIKTNTEEKPFKCKLCSKSYTQKVHLKTHIRIHTNEKPFKCEICSKCFTQSSHLKRHIRSHTGEKPFICEICSKCFTQSSSLKTHIRTHTDEKPFKCEICPKSYTQNVNLKSHIRTHTVKKPFKCKICSKCFIKSGTLKRHIRTHPVKKTFKCRICSKCFTHSINLKTHIITHTDEKPFKCKICSKCFTEQSNLKRHIITHTNQKPFKCKVCSKCFTQSDSLKIHIRIHTGEKPFKCKICSKCFRQSQNLKMHIRSHTGEKPFICEICSKCFTQYGNLKTHIRTHTNEKPFKCKICWKSFTQSASLKRHITTHTDEKPFKCRICSKCFTHSGSLKTHITTHSDSNPFKCKICSKSFTKSVNLKIHIKIHTGEKTFRCKICSKCFIQSSKLKRHIRTHTGEKPFRCEICSKCFTQSDHLNTHIKTHTDEKPFKCKMCSKCFTQKCHLKQHIKTHTNLKPFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056794;
90% Identity: iTF_00056794;
80% Identity: iTF_00056794;